Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/shakedzy/dython

dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
analysis correlation data modeling plot python roc
Added: 13 days ago - Last Synced: 13 days ago - Created: February 04, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 555
  • Committers: 19
  • Issues: 75
  • Pull Requests: 52
  • Owner: shakedzy
  • Stars: 508
  • Forks: 102
  • Packages: 9
  • Downloads: 68,403
https://github.com/cnes/lenapy

Lenapy: Enhancing xarray for multidimensional geophysical data analysis - Published in JOSS (2025)
geophysics gravity oceanography python xarray
Added: 18 days ago - Last Synced: 18 days ago - Created: April 22, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 0
  • Pull Requests: 4
  • Owner: CNES
  • Stars: 6
  • Forks: 3
  • Packages: 0
https://github.com/imperialcollegelondon/rojak

rojak: A Python library and tool for aviation turbulence diagnostics - Published in JOSS (2025)
aerospace-engineering aviation clear-air-turbulence climate-change library turbulence
Added: 18 days ago - Last Synced: 18 days ago - Created: May 02, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 816
  • Committers: 2
  • Issues: 1
  • Pull Requests: 77
https://github.com/hwo-yield-visualizations/yieldplotlib

yieldplotlib: A unified library for exoplanet yield code visualizations - Published in JOSS (2025)
exoplanets matplotlib visualizations
Added: 19 days ago - Last Synced: 19 days ago - Created: June 05, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 20
  • Pull Requests: 82
https://github.com/zoran-cuckovic/qgis-visibility-analysis

Advanced viewshed analysis: a Quantum GIS plug-in for the analysis of visual landscapes - Published in JOSS (2016)
qgis qgis2-python-plugins qgis3-plugin visibility-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: February 08, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 211
  • Committers: 9
  • Issues: 77
  • Pull Requests: 9
https://github.com/bihealth/vcfpy

VCFPy: a Python 3 library with good support for both reading and writing VCF - Published in JOSS (2016)
bioinformatics file-format parsing vcf writing
Added: 2 months ago - Last Synced: 2 months ago - Created: September 15, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 223
  • Committers: 8
  • Issues: 40
  • Pull Requests: 120
  • Owner: bihealth
  • Stars: 109
  • Forks: 23
  • Packages: 1
  • Downloads: 26,176
https://github.com/vida-nyu/reprozip

ReproZip: The Reproducibility Packer - Published in JOSS (2016)
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Added: 2 months ago - Last Synced: 2 months ago - Created: May 06, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2181
  • Committers: 16
  • Issues: 57
  • Pull Requests: 50
  • Owner: VIDA-NYU
  • Stars: 348
  • Forks: 36
  • Packages: 13
  • Downloads: 2,971
https://github.com/BioPandas/biopandas

BioPandas: Working with molecular structures in pandas DataFrames - Published in JOSS (2017)
bioinformatics computational-biology drug-discovery mol2 molecular-structures molecule molecules pandas-dataframe pdb pdb-files protein-structure
Added: 2 months ago - Last Synced: 2 months ago - Created: November 21, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 288
  • Committers: 17
  • Issues: 45
  • Pull Requests: 80
  • Owner: BioPandas
  • Stars: 739
  • Forks: 117
  • Packages: 3
https://github.com/dib-lab/khmer

khmer release v2.1: software for biological sequence analysis - Published in JOSS (2017)
bioinformatics bloom-filter count-min-sketch dna graph-traversal k-mer python
Added: 2 months ago - Last Synced: 2 months ago - Created: May 15, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5159
  • Committers: 87
  • Issues: 70
  • Pull Requests: 48
  • Owner: dib-lab
  • Stars: 782
  • Forks: 297
  • Packages: 2
  • Downloads: 3,383
https://github.com/adrn/schwimmbad

schwimmbad: A uniform interface to parallel processing pools in Python - Published in JOSS (2017)
mpi multiprocessing parallel-computing
Added: 2 months ago - Last Synced: 2 months ago - Created: September 05, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 194
  • Committers: 9
  • Issues: 33
  • Pull Requests: 50
  • Owner: adrn
  • Stars: 120
  • Forks: 19
  • Packages: 2
  • Downloads: 26,286
https://github.com/ljvmiranda921/pyswarms

PySwarms: a research toolkit for Particle Swarm Optimization in Python - Published in JOSS (2018)
algorithm discrete-optimization global-optimization machine-learning metaheuristics optimization optimization-algorithms optimization-tools particle-swarm-optimization pso swarm-intelligence
Added: 2 months ago - Last Synced: 2 months ago - Created: July 12, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 364
  • Committers: 44
  • Issues: 90
  • Pull Requests: 39
  • Owner: ljvmiranda921
  • Stars: 1364
  • Forks: 339
  • Packages: 16
  • Downloads: 71,898
https://github.com/expfactory/expfactory

The Experiment Factory: Reproducible Experiment Containers - Published in JOSS (2018)
battery container experiment-factory experiments expfactory psychology reproducible singularity
Added: 2 months ago - Last Synced: 2 months ago - Created: October 28, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 517
  • Committers: 4
  • Issues: 59
  • Pull Requests: 48
  • Owner: expfactory
  • Stars: 39
  • Forks: 14
  • Packages: 1
  • Downloads: 1,264
https://github.com/sepandhaghighi/pycm

PyCM: Multiclass confusion matrix library in Python - Published in JOSS (2018)
accuracy ai artificial-intelligence classification confusion-matrix data data-analysis data-mining data-science deep-learning deeplearning evaluation machine-learning mathematics matrix ml multiclass-classification neural-network statistical-analysis statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 22, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2864
  • Committers: 18
  • Issues: 42
  • Pull Requests: 230
  • Owner: sepandhaghighi
  • Stars: 1489
  • Forks: 125
  • Packages: 2
  • Downloads: 183,271
https://github.com/fatiando/verde

Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)
earth-science fatiando-a-terra geophysics geoscience geospatial interpolation machine-learning python python3 scipy scipy-stack
Added: 2 months ago - Last Synced: 2 months ago - Created: April 25, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 337
  • Committers: 15
  • Issues: 61
  • Pull Requests: 218
  • Owner: fatiando
  • Stars: 642
  • Forks: 74
  • Packages: 3
  • Downloads: 9,768
https://github.com/arviz-devs/arviz

ArviZ a unified library for exploratory analysis of Bayesian models in Python - Published in JOSS (2019)
bayesian closember python
Added: 2 months ago - Last Synced: 2 months ago - Created: July 29, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1562
  • Committers: 183
  • Issues: 161
  • Pull Requests: 293
  • Owner: arviz-devs
  • Stars: 1737
  • Forks: 458
  • Packages: 5
  • Downloads: 3,572,304
https://github.com/pmeal/porespy

PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images - Published in JOSS (2019)
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Added: 2 months ago - Last Synced: 2 months ago - Created: May 06, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 3761
  • Committers: 42
  • Issues: 181
  • Pull Requests: 221
  • Owner: PMEAL
  • Stars: 371
  • Forks: 110
  • Packages: 2
  • Downloads: 6,981
https://github.com/brandondube/prysm

prysm: A Python optics module - Published in JOSS (2019)
4d diffraction forbes-polynomial gpu-computing modeling mtf mtf-mapper optics phase-retrieval phasecam propagation psf python q-polynomial raytracing trioptics wavefront wavefront-sensing zernike zygo
Added: 2 months ago - Last Synced: 2 months ago - Created: February 13, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1607
  • Committers: 12
  • Issues: 91
  • Pull Requests: 13
  • Owner: brandondube
  • Stars: 315
  • Forks: 53
  • Packages: 1
  • Downloads: 914
https://github.com/tqdm/tqdm

tqdm: A Fast, Extensible Progress Meter for Python and CLI - Published in JOSS (2019)
cli closember console discord gui jupyter keras meter pandas parallel progress progress-bar progressbar progressmeter python rate telegram terminal time utilities
Added: 2 months ago - Last Synced: 2 months ago - Created: June 03, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1726
  • Committers: 117
  • Issues: 235
  • Pull Requests: 226
  • Owner: tqdm
  • Stars: 30563
  • Forks: 1401
  • Packages: 4
  • Downloads: 106,596
https://github.com/pyvista/pyvista

PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)
3d fem finite-element-analysis finite-elements hacktoberfest mesh mesh-processing meshviewer open-science plotting python scientific-research scientific-visualization visualization vtk
Added: 2 months ago - Last Synced: 2 months ago - Created: May 31, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5362
  • Committers: 187
  • Issues: 752
  • Pull Requests: 3680
  • Owner: pyvista
  • Stars: 3328
  • Forks: 595
  • Packages: 4
  • Downloads: 881,583
https://github.com/opengeovis/pvgeo

PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
3d data-visualization geophysics geosciences model-building open-science paraview paraview-plugin python visual-data-integration visualization vtk
Added: 2 months ago - Last Synced: 2 months ago - Created: July 18, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1730
  • Committers: 7
  • Issues: 46
  • Pull Requests: 64
  • Owner: OpenGeoVis
  • Stars: 227
  • Forks: 43
  • Packages: 3
  • Downloads: 2,414
https://github.com/xoolive/traffic

traffic, a toolbox for processing and analysing air traffic data - Published in JOSS (2019)
adsb air-traffic-data data-analytics data-science data-visualisation declarative-pipeline mode-s trajectory
Added: 2 months ago - Last Synced: 2 months ago - Created: March 27, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1540
  • Committers: 38
  • Issues: 38
  • Pull Requests: 287
  • Owner: xoolive
  • Stars: 440
  • Forks: 86
  • Packages: 2
  • Downloads: 6,321
https://github.com/emsig/emg3d

emg3d: A multigrid solver for 3D electromagnetic diffusion - Published in JOSS (2019)
csem electromagnetic geophysics modelling multigrid python
Added: 2 months ago - Last Synced: 2 months ago - Created: April 17, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 346
  • Committers: 2
  • Issues: 31
  • Pull Requests: 112
  • Owner: emsig
  • Stars: 70
  • Forks: 8
  • Packages: 2
  • Downloads: 496
https://github.com/bihealth/altamisa

AltamISA: a Python API for ISA-Tab files - Published in JOSS (2019)
bioinformatics isa isa-tab
Added: 2 months ago - Last Synced: 2 months ago - Created: February 22, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 147
  • Committers: 8
  • Issues: 52
  • Pull Requests: 118
  • Owner: bihealth
  • Stars: 5
  • Forks: 2
  • Packages: 1
  • Downloads: 1,496
https://github.com/jlustigy/coronagraph

coronagraph: Telescope Noise Modeling for Exoplanets in Python - Published in JOSS (2019)
astronomy coronagraph exoplanets spectroscopy
Added: 2 months ago - Last Synced: 2 months ago - Created: January 29, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 239
  • Committers: 3
  • Issues: 6
  • Pull Requests: 4
  • Owner: jlustigy
  • Stars: 6
  • Forks: 8
  • Packages: 1
  • Downloads: 334
https://github.com/zfit/phasespace

phasespace: n-body phase space generation in Python - Published in JOSS (2019)
hep physics-simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: February 27, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 588
  • Committers: 11
  • Issues: 25
  • Pull Requests: 123
  • Owner: zfit
  • Stars: 24
  • Forks: 10
  • Packages: 2
  • Downloads: 1,079
https://github.com/earthlab/earthpy

EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools. - Published in JOSS (2019)
education python raster spatial-data vector
Added: 2 months ago - Last Synced: 2 months ago - Created: February 20, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 947
  • Committers: 38
  • Issues: 11
  • Pull Requests: 176
  • Owner: earthlab
  • Stars: 529
  • Forks: 162
  • Packages: 3
  • Downloads: 17,184
https://github.com/ytree-project/ytree

ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
analysis astronomy astrophysics data merger-trees python simulations trees
Added: 2 months ago - Last Synced: 2 months ago - Created: July 27, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1448
  • Committers: 6
  • Issues: 24
  • Pull Requests: 127
  • Owner: ytree-project
  • Stars: 16
  • Forks: 10
  • Packages: 2
  • Downloads: 368
https://github.com/larq/larq

Larq: An Open-Source Library for Training Binarized Neural Networks - Published in JOSS (2020)
binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow
Added: 2 months ago - Last Synced: 2 months ago - Created: March 18, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 735
  • Committers: 18
  • Issues: 46
  • Pull Requests: 180
  • Owner: larq
  • Stars: 718
  • Forks: 85
  • Packages: 1
  • Downloads: 2,574
https://github.com/oschwengers/referenceseeker

ReferenceSeeker: rapid determination of appropriate reference genomes - Published in JOSS (2020)
ani bioinformatics mash microbiology reference-genomes refseq wgs
Added: 2 months ago - Last Synced: 2 months ago - Created: November 01, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 222
  • Committers: 1
  • Issues: 27
  • Pull Requests: 4
  • Owner: oschwengers
  • Stars: 97
  • Forks: 6
  • Packages: 1
  • Downloads: 32
https://github.com/NeuroDiffGym/neurodiffeq

NeuroDiffEq: A Python package for solving differential equations with neural networks - Published in JOSS (2020)
artificial-intelligence boundary-value-problem deep-learning differential-equations initial-value-problem mathematical-modelling neural-networks ode odes pde-solver physics-informed-neural-networks pinn pypi pytorch scientific-computing time-series
Added: 2 months ago - Last Synced: 2 months ago - Created: March 28, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1112
  • Committers: 22
  • Issues: 51
  • Pull Requests: 72
  • Owner: NeuroDiffGym
  • Stars: 766
  • Forks: 99
  • Packages: 1
  • Downloads: 394
https://github.com/babinyurii/recan

Recan: Python tool for analysis of recombination events in viral genomes - Published in JOSS (2020)
alignment bioinformatics distance-plots dna-recombination genetic-distances python recombination-events virology
Added: 2 months ago - Last Synced: 2 months ago - Created: May 30, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 285
  • Committers: 3
  • Issues: 15
  • Pull Requests: 5
  • Owner: babinyurii
  • Stars: 10
  • Forks: 7
  • Packages: 1
  • Downloads: 36
https://github.com/samuelduchesne/archetypal

archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)
archetypes buildings energy-simulation energyplus energyplus-models python simulation-templates umi umi-template visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: October 17, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2626
  • Committers: 7
  • Issues: 14
  • Pull Requests: 168
  • Owner: samuelduchesne
  • Stars: 17
  • Forks: 9
  • Packages: 1
  • Downloads: 1,866
https://github.com/sap218/jabberwocky

Jabberwocky: an ontology-aware toolkit for manipulating text - Published in JOSS (2020)
annotation grep jabberwocky ontology plotting python synonyms text-mining textual-data tfidf
Added: 2 months ago - Last Synced: 2 months ago - Created: December 12, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 123
  • Committers: 3
  • Issues: 13
  • Pull Requests: 7
  • Owner: sap218
  • Stars: 16
  • Forks: 1
  • Packages: 1
https://github.com/gee-community/geemap

geemap: A Python package for interactive mapping with Google Earth Engine - Published in JOSS (2020)
colab data-science dataviz earth-engine earthengine folium geospatial gis google-earth-engine image-processing ipyleaflet ipywidgets jupyter jupyter-notebook landsat mapping python remote-sensing streamlit streamlit-webapp
Added: 2 months ago - Last Synced: 2 months ago - Created: March 08, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1675
  • Committers: 61
  • Issues: 245
  • Pull Requests: 544
  • Owner: gee-community
  • Stars: 3768
  • Forks: 1124
  • Packages: 4
  • Downloads: 69,328
https://github.com/rgerum/pylustrator

pylustrator: code generation for reproducible figures for publication - Published in JOSS (2020)
code-generation gui interactive matplotlib visualisation
Added: 2 months ago - Last Synced: 2 months ago - Created: June 21, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 497
  • Committers: 9
  • Issues: 58
  • Pull Requests: 19
  • Owner: rgerum
  • Stars: 881
  • Forks: 41
  • Packages: 2
  • Downloads: 502
https://github.com/keurfonluu/toughio

toughio: Pre- and post-processing Python library for TOUGH - Published in JOSS (2020)
io postprocessing preprocessing tough2 tough3
Added: 2 months ago - Last Synced: 2 months ago - Created: July 22, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1338
  • Committers: 1
  • Issues: 53
  • Pull Requests: 85
  • Owner: keurfonluu
  • Stars: 66
  • Forks: 9
  • Packages: 1
  • Downloads: 572
https://github.com/swiftsim/swiftsimio

swiftsimio: A Python library for reading SWIFT data - Published in JOSS (2020)
astrophysics cosmology hdf5 particle simulation sph
Added: 2 months ago - Last Synced: 2 months ago - Created: March 11, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 842
  • Committers: 22
  • Issues: 92
  • Pull Requests: 163
  • Owner: SWIFTSIM
  • Stars: 26
  • Forks: 14
  • Packages: 1
  • Downloads: 7,061
https://github.com/brainglobe/brainglobe-atlasapi

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)
atlases brain microscopy neuroscience python registration visualisation
Added: 2 months ago - Last Synced: 2 months ago - Created: April 30, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 408
  • Committers: 36
  • Issues: 239
  • Pull Requests: 264
  • Owner: brainglobe
  • Stars: 164
  • Forks: 49
  • Packages: 1
  • Downloads: 6,909
https://github.com/jboynyc/textnets

textnets: A Python package for text analysis with networks - Published in JOSS (2020)
computational-social-science network-analysis nlp sociology text-analysis text-as-data visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: December 15, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 905
  • Committers: 9
  • Issues: 43
  • Pull Requests: 22
  • Owner: jboynyc
  • Stars: 289
  • Forks: 24
  • Packages: 2
  • Downloads: 2,288
https://github.com/biosteamdevelopmentgroup/thermosteam

Thermosteam: BioSTEAM's Premier Thermodynamic Engine - Published in JOSS (2020)
chemical chemical-engineering equations-of-state liquid-liquid-equilibrium material-and-energy-balance mixture properties reaction thermodynamics vapor-liquid-equilibrium
Added: 2 months ago - Last Synced: 2 months ago - Created: November 02, 2019

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  • Main Language: Python
  • Commits: 1285
  • Committers: 7
  • Issues: 72
  • Pull Requests: 27
https://github.com/scikit-hep/pyhf

pyhf: pure-Python implementation of HistFactory statistical models - Published in JOSS (2021)
asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python scientific-computations scikit-hep scipy statistical-inference statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 24, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1451
  • Committers: 36
  • Issues: 124
  • Pull Requests: 492
  • Owner: scikit-hep
  • Stars: 291
  • Forks: 90
  • Packages: 2
  • Downloads: 1,253,052
https://github.com/dynamicslab/pysensors

PySensors: A Python package for sparse sensor placement - Published in JOSS (2021)
optimization-tools sensor sensor-placement sensors
Added: 2 months ago - Last Synced: 2 months ago - Created: May 01, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
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  • Main Language: Python
  • Commits: 396
  • Committers: 10
  • Issues: 8
  • Pull Requests: 29
  • Owner: dynamicslab
  • Stars: 103
  • Forks: 25
  • Packages: 1
  • Downloads: 1,730
https://github.com/learningsimulator/learningsimulator

Learning Simulator: A simulation software for animal and human learning - Published in JOSS (2021)
associative-learning behavior gui mathematical-modelling python reinforcement-learning simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: November 25, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 313
  • Committers: 3
  • Issues: 76
  • Pull Requests: 25
https://github.com/ghislainv/forestatrisk

forestatrisk: a Python package for modelling and forecasting deforestation in the tropics - Published in JOSS (2021)
biodiversity-scenario co2-emissions deforestation deforestation-risk forecasting forest-cover-change ipbes ipcc land-use-change protected-areas python redd roads spatial-analysis spatial-autocorrelation spatial-modelling tropical-forests
Added: 2 months ago - Last Synced: 2 months ago - Created: December 01, 2016

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 688
  • Committers: 7
  • Issues: 38
  • Pull Requests: 53
  • Owner: ghislainv
  • Stars: 129
  • Forks: 30
  • Packages: 2
  • Downloads: 950
https://github.com/opengeos/lidar

lidar: A Python package for delineating nested surface depressions from digital elevation data - Published in JOSS (2021)
digital-elevation-model gis hydrological image-processing lidar python remote-sensing terrain-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: May 14, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 206
  • Committers: 6
  • Issues: 24
  • Pull Requests: 49
  • Owner: opengeos
  • Stars: 291
  • Forks: 54
  • Packages: 1
  • Downloads: 1,184
https://github.com/polsartools/PolSARtools-QGIS

PolSAR tools: A QGIS plugin for generating SAR descriptors - Published in JOSS (2021)
polarimetric-decompositions polarimetric-sar-data qgis3-plugin radar-vegetation sar
Added: 2 months ago - Last Synced: 2 months ago - Created: February 06, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 267
  • Committers: 5
  • Issues: 2
  • Pull Requests: 1
https://github.com/exoplanet-dev/exoplanet

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series - Published in JOSS (2021)
astronomy astrophysics bayesian-inference exoplanet exoplanet-radial-velocities exoplanet-transits exoplanets gaussian-processes mcmc pymc3 time-series time-series-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: June 20, 2018

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  • Main Language: Python
  • Commits: 1210
  • Committers: 17
  • Issues: 50
  • Pull Requests: 142
  • Owner: exoplanet-dev
  • Stars: 225
  • Forks: 54
  • Packages: 2
  • Downloads: 11,800
https://github.com/jofmi/agentpy

AgentPy: A package for agent-based modeling in Python - Published in JOSS (2021)
abm agent-based-modeling agent-based-simulation agentpy complex-systems networks networkx python salib
Added: 2 months ago - Last Synced: 2 months ago - Created: June 19, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 312
  • Committers: 6
  • Issues: 43
  • Pull Requests: 27
  • Owner: jofmi
  • Stars: 358
  • Forks: 41
  • Packages: 0
https://github.com/datalad/datalad

DataLad: distributed system for joint management of code, data, and their relationship - Published in JOSS (2021)
closember data-storage dataset git-annex python usable
Added: 2 months ago - Last Synced: 2 months ago - Created: November 01, 2013

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  • Main Language: Python
  • Commits: 13447
  • Committers: 61
  • Issues: 302
  • Pull Requests: 378
  • Owner: datalad
  • Stars: 612
  • Forks: 115
  • Packages: 2
  • Downloads: 32,880
https://github.com/virgesmith/neworder

neworder: a dynamic microsimulation framework for Python - Published in JOSS (2021)
cplusplus-20 markov-chain microsimulation monte-carlo mpi numpy pandas pybind11 python3
Added: 2 months ago - Last Synced: 2 months ago - Created: November 25, 2017

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  • Main Language: Python
  • Commits: 998
  • Committers: 6
  • Issues: 64
  • Pull Requests: 29
  • Owner: virgesmith
  • Stars: 20
  • Forks: 4
  • Packages: 1
  • Downloads: 838
https://github.com/derrynknife/surpyval

SurPyval: Survival Analysis with Python - Published in JOSS (2021)
actuarial-science churn-prediction non-parametric parametric-distribution parametric-methods probability-plot reliability reliability-analysis reliability-engineering risk-analysis survival-analysis weibull
Added: 2 months ago - Last Synced: 2 months ago - Created: December 15, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 668
  • Committers: 7
  • Issues: 36
  • Pull Requests: 15
  • Owner: derrynknife
  • Stars: 48
  • Forks: 5
  • Packages: 1
  • Downloads: 13,503
https://github.com/mpi4jax/mpi4jax

mpi4jax: Zero-copy MPI communication of JAX arrays - Published in JOSS (2021)
gpu high-performance-computing jax jit mpi parallel-computing xla
Added: 2 months ago - Last Synced: 2 months ago - Created: July 21, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 300
  • Committers: 7
  • Issues: 49
  • Pull Requests: 170
  • Owner: mpi4jax
  • Stars: 496
  • Forks: 33
  • Packages: 4
  • Downloads: 1,461
https://github.com/saran-nns/sorn

sorn: A Python package for Self Organizing Recurrent Neural Network - Published in JOSS (2021)
associative-networks autonomous-agents bolzmann-machines brain-inspired-computing complex-networks cortical-learning cortical-network hebbian-learning hopfield-network machine-learning neuro-computing neuroinformatics neuroplasticity point-neurons reinforcement-learning reservoir-computing self-organizing-criticality self-organizing-network sorn
Added: 2 months ago - Last Synced: 2 months ago - Created: March 09, 2019

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 948
  • Committers: 2
  • Issues: 23
  • Pull Requests: 24
  • Owner: Saran-nns
  • Stars: 38
  • Forks: 3
  • Packages: 1
  • Downloads: 799
https://github.com/dmey/synthia

Synthia: multidimensional synthetic data generation in Python - Published in JOSS (2021)
augmentation climate copula data-augmentation data-generation data-generator data-modelling data-science dependency-analysis dependency-modeling finance fpca functional-data machine-learning oversampling principal-component-analysis statistics synthetic-data weather xarray
Added: 2 months ago - Last Synced: 2 months ago - Created: March 01, 2020

  • Relevant topics? true
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  • Open source license? true
  • Active? true
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  • Main Language: Python
  • Commits: 59
  • Committers: 4
  • Issues: 11
  • Pull Requests: 21
  • Owner: dmey
  • Stars: 64
  • Forks: 10
  • Packages: 1
  • Downloads: 73
https://github.com/andr1976/hyddown

HydDown: A Python package for calculation of hydrogen (or other gas) pressure vessel filling and discharge - Published in JOSS (2021)
blow-down coolprop depressurisation gas-phase heat-transfer pressure python relief-valve thermodynamics
Added: 2 months ago - Last Synced: 2 months ago - Created: March 30, 2021

  • Relevant topics? false
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  • Open source license? true
  • Active? true
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  • Main Language: Python
  • Commits: 601
  • Committers: 4
  • Issues: 17
  • Pull Requests: 84
  • Owner: andr1976
  • Stars: 36
  • Forks: 8
  • Packages: 1
  • Downloads: 60
https://github.com/npucino/sandpyper

sandpyper: A Python package for UAV-SfM beach volumetric and behavioural analysis - Published in JOSS (2021)
beach coastal-dynamics erosion remote-sensing satellite-data shoreline uav-imagery
Added: 2 months ago - Last Synced: 2 months ago - Created: February 22, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
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  • Main Language: Python
  • Commits: 499
  • Committers: 2
  • Issues: 8
  • Pull Requests: 9
  • Owner: npucino
  • Stars: 11
  • Forks: 1
  • Packages: 1
  • Downloads: 56
https://github.com/kineticstoolkit/kineticstoolkit

Kinetics Toolkit: An Open-Source Python Package to Facilitate Research in Biomechanics - Published in JOSS (2021)
api biomechanics kinematics kinetics python toolbox
Added: 2 months ago - Last Synced: 2 months ago - Created: May 28, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 618
  • Committers: 5
  • Issues: 81
  • Pull Requests: 7
https://github.com/galsci/pysm

The Python Sky Model 3 software - Published in JOSS (2021)
cosmic-microwave-background cosmology healpix healpy mpi python
Added: 2 months ago - Last Synced: 2 months ago - Created: December 12, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 1164
  • Committers: 14
  • Issues: 83
  • Pull Requests: 108
  • Owner: galsci
  • Stars: 39
  • Forks: 30
  • Packages: 1
  • Downloads: 3,685
https://github.com/AndreWeiner/flowtorch

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows - Published in JOSS (2021)
cnm csv davis dmd dynamic-mode-decomposition hdf5 ipsp jupyter machine-learning netcdf openfoam pod proper-orthogonal-decomposition pytorch tau
Added: 2 months ago - Last Synced: 2 months ago - Created: June 24, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 289
  • Committers: 7
  • Issues: 44
  • Pull Requests: 9
https://github.com/alan-turing-institute/palaeoanalytics

PyLithics: A Python package for stone tool analysis - Published in JOSS (2022)
hut23 hut23-530
Added: 2 months ago - Last Synced: 2 months ago - Created: October 13, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 575
  • Committers: 3
  • Issues: 35
  • Pull Requests: 77
https://github.com/ni1o1/transbigdata

TransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualization - Published in JOSS (2022)
bike-sharing-data bus-gps-data data-analysis data-pre-processing data-quality-analysis data-visualization geospatial-data python spatio-temporal-data taxi-gps-data transportation
Added: 2 months ago - Last Synced: 2 months ago - Created: October 21, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 613
  • Committers: 9
  • Issues: 52
  • Pull Requests: 48
  • Owner: ni1o1
  • Stars: 522
  • Forks: 118
  • Packages: 2
  • Downloads: 2,040
https://github.com/csdms/babelizer

The Babelizer: language interoperability for model coupling in the geosciences - Published in JOSS (2022)
bmi c csdms cxx fortran hacktoberfest pymt python
Added: 2 months ago - Last Synced: 2 months ago - Created: April 05, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 274
  • Committers: 3
  • Issues: 32
  • Pull Requests: 96
  • Owner: csdms
  • Stars: 5
  • Forks: 3
  • Packages: 1
https://github.com/dgbowl/yadg

yadg: yet another datagram - Published in JOSS (2022)
batteries catalysis chromatography data-science electrochemistry parser
Added: 2 months ago - Last Synced: 2 months ago - Created: January 13, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 362
  • Committers: 12
  • Issues: 78
  • Pull Requests: 193
  • Owner: dgbowl
  • Stars: 47
  • Forks: 16
  • Packages: 1
  • Downloads: 1,416
https://github.com/cgre-aachen/gemgis

GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)
geographic geographic-data geomodeling geospatial jupyter jupyter-notebook modeling notebooks processing python raster-data spatial-data vector-data visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: April 25, 2020

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1136
  • Committers: 16
  • Issues: 125
  • Pull Requests: 51
  • Owner: cgre-aachen
  • Stars: 279
  • Forks: 43
  • Packages: 3
  • Downloads: 1,218
https://github.com/pysal/spopt

spopt: a python package for solving spatial optimization problems in PySAL - Published in JOSS (2022)
facility-location location-allocation location-modeling python regionalization resource-planning routing spatial-analysis spatial-optimization transportation
Added: 2 months ago - Last Synced: 2 months ago - Created: March 01, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 871
  • Committers: 23
  • Issues: 113
  • Pull Requests: 130
  • Owner: pysal
  • Stars: 344
  • Forks: 55
  • Packages: 3
  • Downloads: 39,371
https://github.com/c0pep0d/otto

OTTO: A Python package to simulate, solve and visualize the source-tracking POMDP - Published in JOSS (2022)
olfactory-search pomdp reinforcement-learning source-tracking
Added: 2 months ago - Last Synced: 2 months ago - Created: February 10, 2022

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 146
  • Committers: 1
  • Issues: 5
  • Pull Requests: 1
  • Owner: C0PEP0D
  • Stars: 17
  • Forks: 6
  • Packages: 0
https://github.com/ronshnapp/myptv

MyPTV: A Python Package for 3D Particle Tracking - Published in JOSS (2022)
3d-ptv experiments fluid-mechanics measurements particle-tracking photogrammetry python turbulence
Added: 2 months ago - Last Synced: 2 months ago - Created: March 21, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 318
  • Committers: 3
  • Issues: 35
  • Pull Requests: 6
  • Owner: ronshnapp
  • Stars: 62
  • Forks: 20
  • Packages: 0
https://github.com/open-atmos/PyMPDATA

PyMPDATA v1: Numba-accelerated implementation of MPDATA with examples in Python, Julia and Matlab - Published in JOSS (2022)
advection advection-diffusion atmospheric-modelling numba numerical-integration pde-solver pypi-package python research simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: December 03, 2019

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1114
  • Committers: 18
  • Issues: 80
  • Pull Requests: 384
  • Owner: open-atmos
  • Stars: 30
  • Forks: 22
  • Packages: 2
  • Downloads: 2,988
https://github.com/jfowkes/pycutest

PyCUTEst: an open source Python package of optimization test problems - Published in JOSS (2022)
optimization-tools
Added: 2 months ago - Last Synced: 2 months ago - Created: May 31, 2018

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 221
  • Committers: 7
  • Issues: 61
  • Pull Requests: 49
  • Owner: jfowkes
  • Stars: 37
  • Forks: 11
  • Packages: 1
  • Downloads: 960
https://github.com/bancaditalia/black-it

Black-it: A Ready-to-Use and Easy-to-Extend Calibration Kit for Agent-based Models - Published in JOSS (2022)
agent-based agent-based-modeling agent-based-simulation calibration-toolbox optimization
Added: 2 months ago - Last Synced: 2 months ago - Created: May 17, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 324
  • Committers: 5
  • Issues: 11
  • Pull Requests: 114
  • Owner: bancaditalia
  • Stars: 55
  • Forks: 2
  • Packages: 1
  • Downloads: 121
https://github.com/chmarti1/pyromat

PYroMat: A Python package for thermodynamic properties - Published in JOSS (2022)
python thermodynamic-properties thermodynamics
Added: 2 months ago - Last Synced: 2 months ago - Created: October 14, 2016

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 253
  • Committers: 3
  • Issues: 75
  • Pull Requests: 25
  • Owner: chmarti1
  • Stars: 82
  • Forks: 12
  • Packages: 0
https://github.com/ggonnella/fastsubtrees

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy - Published in JOSS (2022)
bioinformatics ncbi-taxonomy python subtree subtree-extraction subtree-query taxonomy tree
Added: 2 months ago - Last Synced: 2 months ago - Created: November 26, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 482
  • Committers: 4
  • Issues: 25
  • Pull Requests: 2
  • Owner: ggonnella
  • Stars: 4
  • Forks: 0
  • Packages: 5
  • Downloads: 132
https://github.com/vyrjana/deareis

DearEIS - A GUI program for analyzing impedance spectra - Published in JOSS (2022)
electrochemistry impedance impedance-spectroscopy python
Added: 2 months ago - Last Synced: 2 months ago - Created: March 23, 2022

  • Relevant topics? true
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  • Open source license? true
  • Active? true
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  • Main Language: Python
  • Commits: 105
  • Committers: 1
  • Issues: 24
  • Pull Requests: 1
  • Owner: vyrjana
  • Stars: 87
  • Forks: 11
  • Packages: 1
  • Downloads: 412
https://github.com/siavashk/pycpd

PyCPD: Pure NumPy Implementation of the Coherent Point Drift Algorithm - Published in JOSS (2022)
expectation-maximization point-cloud python registration
Added: 2 months ago - Last Synced: 2 months ago - Created: October 23, 2016

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 165
  • Committers: 17
  • Issues: 56
  • Pull Requests: 41
  • Owner: siavashk
  • Stars: 576
  • Forks: 124
  • Packages: 1
  • Downloads: 7,975
https://github.com/onroerenderfgoed/atramhasis

Atramhasis: An online SKOS vocabulary editor - Published in JOSS (2023)
app pypi-package python skos thesaurus vocabulary
Added: 2 months ago - Last Synced: 2 months ago - Created: April 08, 2014

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1722
  • Committers: 27
  • Issues: 97
  • Pull Requests: 8
https://github.com/vocalpy/crowsetta

Crowsetta: A Python tool to work with any format for annotating animal vocalizations and bioacoustics data. - Published in JOSS (2023)
animal-communication animal-vocalizations annotation annotation-format bioacoustic-analysis bioacoustics birdsong csv dataset python python3
Added: 2 months ago - Last Synced: 2 months ago - Created: December 01, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 894
  • Committers: 3
  • Issues: 90
  • Pull Requests: 63
  • Owner: vocalpy
  • Stars: 58
  • Forks: 4
  • Packages: 2
  • Downloads: 1,082
https://github.com/cascella-group-uio/hymd

HylleraasMD: Massively parallel hybrid particle-field molecular dynamics in Python - Published in JOSS (2023)
chemistry coarse-grained hybrid-particle-field molecular-dynamics physics
Added: 2 months ago - Last Synced: 2 months ago - Created: March 05, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 950
  • Committers: 16
  • Issues: 56
  • Pull Requests: 52
https://github.com/prashjet/popkinmocks

popkinmocks: mock IFU datacubes for modelling stellar populations and kinematics - Published in JOSS (2023)
astronomy astrophysics datacube galaxy python spectroscopy stellar-kinematics stellar-populations
Added: 2 months ago - Last Synced: 2 months ago - Created: September 27, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 86
  • Committers: 3
  • Issues: 34
  • Pull Requests: 54
  • Owner: prashjet
  • Stars: 5
  • Forks: 1
  • Packages: 0
https://github.com/nialov/fractopo

fractopo: A Python package for fracture network analysis - Published in JOSS (2023)
analysis fractopo fracture geology geometry python spatial-analysis topology
Added: 2 months ago - Last Synced: 2 months ago - Created: September 21, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1525
  • Committers: 4
  • Issues: 18
  • Pull Requests: 171
  • Owner: nialov
  • Stars: 26
  • Forks: 7
  • Packages: 2
  • Downloads: 117
https://github.com/wbk-robotics/pybullet_industrial

PyBullet Industrial: A process-aware robot simulation - Published in JOSS (2023)
industrial-automation robotics simulation-framework
Added: 2 months ago - Last Synced: 2 months ago - Created: May 11, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 521
  • Committers: 5
  • Issues: 32
  • Pull Requests: 30
https://github.com/edyvision/pii-codex

PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
analysis data-analysis personal-identifiable-information pii pii-detection poetry presidio python python3 research research-software research-tool
Added: 2 months ago - Last Synced: 2 months ago - Created: September 07, 2022

  • Relevant topics? false
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  • Open source license? true
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  • Main Language: Python
  • Commits: 49
  • Committers: 1
  • Issues: 6
  • Pull Requests: 34
  • Owner: EdyVision
  • Stars: 94
  • Forks: 11
  • Packages: 1
  • Downloads: 98
https://github.com/pyplati/platipy

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)
image-analysis medical-imaging python registration segmentation visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: September 22, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 744
  • Committers: 12
  • Issues: 48
  • Pull Requests: 72
  • Owner: pyplati
  • Stars: 137
  • Forks: 29
  • Packages: 1
  • Downloads: 2,730
https://github.com/pyamg/pyamg

PyAMG: Algebraic Multigrid Solvers in Python - Published in JOSS (2023)
amg conda krylov multigrid pyamg python solver sparse-matrix
Added: 2 months ago - Last Synced: 2 months ago - Created: June 22, 2013

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 2283
  • Committers: 35
  • Issues: 74
  • Pull Requests: 117
  • Owner: pyamg
  • Stars: 626
  • Forks: 119
  • Packages: 5
  • Downloads: 94,298
https://github.com/taxprofiler/taxpasta

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation - Published in JOSS (2023)
bioinformatics classification metagenomic-classification metagenomics profiling python standardisation taxonomic-classifications taxonomic-profiling
Added: 2 months ago - Last Synced: 2 months ago - Created: June 03, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 618
  • Committers: 5
  • Issues: 69
  • Pull Requests: 85
  • Owner: taxprofiler
  • Stars: 41
  • Forks: 7
  • Packages: 1
  • Downloads: 56
https://github.com/paulbrodersen/netgraph

Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
graph graph-tool igraph matplotlib network network-analysis network-science networkx publication-quality-plots python visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: October 04, 2016

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 747
  • Committers: 10
  • Issues: 89
  • Pull Requests: 14
  • Owner: paulbrodersen
  • Stars: 733
  • Forks: 44
  • Packages: 1
  • Downloads: 9,030
https://github.com/ethicsai/ethical-smart-grid

Ethical Smart Grid: a Gym environment for learning ethical behaviours - Published in JOSS (2023)
ai-ethics artificial-intelligence gym-environment machine-ethics python reinforcement-learning smart-grid
Added: 2 months ago - Last Synced: 2 months ago - Created: September 13, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 188
  • Committers: 3
  • Issues: 3
  • Pull Requests: 7
  • Owner: ethicsai
  • Stars: 2
  • Forks: 0
  • Packages: 1
  • Downloads: 20
https://github.com/sunpy/ndcube

ndcube: Manipulating N-dimensional Astronomical Data in Python - Published in JOSS (2023)
astropy nddata numfocus sunpy wcs
Added: 2 months ago - Last Synced: 2 months ago - Created: August 15, 2017

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 2548
  • Committers: 35
  • Issues: 106
  • Pull Requests: 421
  • Owner: sunpy
  • Stars: 48
  • Forks: 53
  • Packages: 2
  • Downloads: 72,314
https://github.com/mrsonandrade/pyswarming

PySwarming: a research toolkit for Swarm Robotics - Published in JOSS (2023)
bioinspired engineering math mathematics multi-robot-systems pypi python python-toolkit research robot robotics self-organizing swarm swarm-intelligence swarm-robotics
Added: 2 months ago - Last Synced: 2 months ago - Created: September 09, 2022

  • Relevant topics? false
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 58
  • Committers: 2
  • Issues: 10
  • Pull Requests: 1
  • Owner: mrsonandrade
  • Stars: 29
  • Forks: 5
  • Packages: 1
  • Downloads: 37
https://github.com/tenemark/mikecalsetup

mikecalsetup: an open-source python tool for automatically creating calibration setups of MIKE SHE models in PEST or OSTRICH - Published in JOSS (2023)
calibration mikeshe ostrich pest python
Added: 2 months ago - Last Synced: 2 months ago - Created: November 01, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 54
  • Committers: 2
  • Issues: 10
  • Pull Requests: 4
  • Owner: tenemark
  • Stars: 3
  • Forks: 0
  • Packages: 0
https://github.com/damar-wicaksono/uqtestfuns

UQTestFuns: A Python3 library of uncertainty quantification (UQ) test functions - Published in JOSS (2023)
metamodeling python reliability-analysis sensitivity-analysis test-functions uncertainty-quantification
Added: 2 months ago - Last Synced: 2 months ago - Created: March 24, 2022

  • Relevant topics? false
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  • Open source license? true
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  • Main Language: Python
  • Commits: 377
  • Committers: 3
  • Issues: 182
  • Pull Requests: 153
https://github.com/osemosys/otoole

otoole: OSeMOSYS Tools for Energy Work - Published in JOSS (2023)
energy energy-system energy-system-modelling osemosys
Added: 2 months ago - Last Synced: 2 months ago - Created: September 19, 2019

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 622
  • Committers: 5
  • Issues: 86
  • Pull Requests: 79
  • Owner: OSeMOSYS
  • Stars: 28
  • Forks: 20
  • Packages: 1
  • Downloads: 1,012
https://github.com/akikuno/cstag

cstag and cstag-cli: tools for manipulating and visualizing cs tags - Published in JOSS (2024)
bioinformatics cstag minimap2 python sam sequence
Added: 2 months ago - Last Synced: 2 months ago - Created: March 12, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 248
  • Committers: 2
  • Issues: 12
  • Pull Requests: 16
  • Owner: akikuno
  • Stars: 10
  • Forks: 0
  • Packages: 1
  • Downloads: 1,379
https://github.com/alejandrojuria/tightbinder

tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids - Published in JOSS (2024)
alloys band-structure condensed-matter-physics dft-fit disorder electronic-structure physics python simulation slater-koster solid-state-physics tight-binding topology
Added: 2 months ago - Last Synced: 2 months ago - Created: May 26, 2020

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 401
  • Committers: 4
  • Issues: 8
  • Pull Requests: 6
https://github.com/deeprank/deeprank2

DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning - Published in JOSS (2024)
convolutional-neural-networks deep-learning graph-neural-networks protein-protein-interfaces pytorch single-residue-variants structural-biology
Added: 2 months ago - Last Synced: 2 months ago - Created: January 21, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 3021
  • Committers: 35
  • Issues: 137
  • Pull Requests: 147
  • Owner: DeepRank
  • Stars: 55
  • Forks: 14
  • Packages: 1
  • Downloads: 70
https://github.com/nansencenter/dapper

DAPPER: Data Assimilation with Python: a Package for Experimental Research - Published in JOSS (2024)
bayesian-filter bayesian-methods chaos data-assimilation enkf kalman kalman-filtering particle-filter state-estimation
Added: 2 months ago - Last Synced: 2 months ago - Created: July 04, 2016

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1649
  • Committers: 7
  • Issues: 73
  • Pull Requests: 33
  • Owner: nansencenter
  • Stars: 386
  • Forks: 130
  • Packages: 2
  • Downloads: 878
https://github.com/fabianplum/omnitrax

OmniTrax: A deep learning-driven multi-animal tracking and pose-estimation add-on for Blender - Published in JOSS (2024)
blender deeplabcut deeplearning object-detection tracking yolo
Added: 2 months ago - Last Synced: 2 months ago - Created: November 08, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 360
  • Committers: 1
  • Issues: 43
  • Pull Requests: 2
  • Owner: FabianPlum
  • Stars: 38
  • Forks: 4
  • Packages: 0
https://github.com/utel-uiuc/gtfs_segments

GTFS Segments: A Fast and Efficient Library to Generate Bus Stop Spacings - Published in JOSS (2024)
bus distribution gtfs-feed python stop transit transit-data
Added: 2 months ago - Last Synced: 2 months ago - Created: June 06, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 204
  • Committers: 3
  • Issues: 6
  • Pull Requests: 17
  • Owner: UTEL-UIUC
  • Stars: 46
  • Forks: 3
  • Packages: 3
  • Downloads: 597
https://github.com/mreye-lumc/zospy

ZOSPy: optical ray tracing in Python through OpticStudio - Published in JOSS (2024)
optics optics-simulation opticstudio python zemax zos-api
Added: 2 months ago - Last Synced: 2 months ago - Created: September 06, 2021

  • Relevant topics? false
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  • Open source license? true
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  • Main Language: Python
  • Commits: 248
  • Committers: 9
  • Issues: 21
  • Pull Requests: 201
  • Owner: MREYE-LUMC
  • Stars: 77
  • Forks: 17
  • Packages: 1
  • Downloads: 520
https://github.com/toloka/crowd-kit

Learning from Crowds with Crowd-Kit - Published in JOSS (2024)
aggregations annotation crowd crowdsourcing data-mining data-science labeling python quality-control toloka truth-inference
Added: 2 months ago - Last Synced: 2 months ago - Created: March 01, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 376
  • Committers: 28
  • Issues: 26
  • Pull Requests: 127
  • Owner: Toloka
  • Stars: 233
  • Forks: 19
  • Packages: 1
  • Downloads: 5,565
https://github.com/cement-psaap/mcdc

Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development - Published in JOSS (2024)
high-performance-computing monte-carlo-simulation neutron-transport neutronics nuclear-engineering parallel particle-transport python radiation-transport simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: February 25, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1027
  • Committers: 28
  • Issues: 92
  • Pull Requests: 192
  • Owner: CEMeNT-PSAAP
  • Stars: 45
  • Forks: 27
  • Packages: 1
  • Downloads: 48