https://github.com/astrazeneca/selfpad

The official implementation of "Improving Antibody Humanness Prediction using Patent Data".
https://github.com/astrazeneca/selfpad

Keywords

antibody antibody-design antibody-sequence attention contrastive-learning humanness immunogenicity-prediction patent-data transformer

Last synced: 11 months ago
JSON representation

Acceptance Criteria

Repository metadata

The official implementation of "Improving Antibody Humanness Prediction using Patent Data".


Owner metadata


GitHub Events

Total
Last Year

Issue and Pull Request metadata

Last synced: about 1 year ago

Total issues: 1
Total pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Total issue authors: 1
Total pull request authors: 0
Average comments per issue: 0.0
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0

Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 0.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/astrazeneca/selfpad

Top Issue Authors

  • lukatop (1)

Top Pull Request Authors


Top Issue Labels

Top Pull Request Labels


Dependencies

Pipfile pypi
  • absl-py ==1.4.0
  • aiohttp ==3.9.1
  • aiosignal ==1.3.1
  • anndata ==0.8.0
  • arboreto ==0.1.6
  • async-timeout ==4.0.3
  • attrs ==22.1.0
  • autoflake ==2.1.1
  • autopage ==0.5.1
  • bio ==1.5.6
  • biopython ==1.81
  • biothings-client ==0.2.6
  • biotite ==0.37.0
  • black ==22.3.0
  • bokeh ==2.4.3
  • cachetools ==5.3.0
  • causal-learn ==0.1.3.3
  • causalbench ==1.0.0
  • causaldag ==0.1a163
  • cdt ==0.6.0
  • certifi ==2022.6.15
  • cfgv ==3.3.1
  • charset-normalizer ==2.1.0
  • class-resolver ==0.3.10
  • click ==8.0.4
  • click-default-group ==1.2.2
  • cliff ==3.10.1
  • cloudpickle ==2.1.0
  • cmaes ==0.8.2
  • cmake ==3.24.0
  • cmd2 ==2.4.2
  • colorlog ==6.6.0
  • conditional-independence ==0.1a6
  • cycler ==0.11.0
  • cython ==0.29.32
  • dask ==2023.3.1
  • databricks-cli ==0.17.1
  • dataclasses ==0.6
  • dataclasses-json ==0.5.7
  • datatable ==1.0.0
  • decorator ==5.1.1
  • deprecated ==1.2.13
  • distlib ==0.3.6
  • distributed ==2023.3.1
  • docdata ==0.0.3
  • docker ==5.0.3
  • easydict ==1.10
  • einops ==0.4.1
  • et-xmlfile ==1.1.0
  • filelock ==3.8.0
  • flask ==2.2.2
  • fonttools ==4.34.4
  • frozendict ==2.3.6
  • frozenlist ==1.3.3
  • fsspec ==2023.3.0
  • future ==0.18.3
  • gdown ==4.6.6
  • gies ==0.0.1
  • google-auth ==2.18.1
  • google-auth-oauthlib ==1.0.0
  • gprofiler-official ==1.0.0
  • gputil ==1.4.0
  • graphical-model-learning ==0.1a8
  • graphical-models ==0.1a19
  • graphtools ==1.5.3
  • graphviz ==0.20.1
  • grpcio ==1.50.0
  • gunicorn ==20.1.0
  • h5py ==3.8.0
  • heapdict ==1.0.1
  • identify ==2.5.21
  • idna ==3.3
  • igraph ==0.10.4
  • ilock ==1.0.3
  • ipdb ==0.13.13
  • isort ==5.10.1
  • itsdangerous ==2.1.2
  • joblib ==1.1.0
  • jsonschema ==4.17.0
  • kiwisolver ==1.4.4
  • lazypredict ==0.2.12
  • lightgbm ==3.3.3
  • lightning-utilities ==0.10.0
  • littleballoffur ==2.1.12
  • littleutils ==0.2.2
  • llvmlite ==0.39.1
  • lmdb ==1.4.1
  • locket ==1.0.0
  • lz4 ==4.3.2
  • magic-impute ==3.0.0
  • markdown ==3.4.3
  • marshmallow ==3.17.0
  • marshmallow-enum ==1.5.1
  • matplotlib ==3.5.2
  • mlflow ==1.28.0
  • modal ==0.4.1
  • more-click ==0.1.1
  • more-itertools ==8.14.0
  • msgpack ==1.0.4
  • multidict ==6.0.4
  • mygene ==3.2.2
  • mypy-extensions ==0.4.3
  • natsort ==8.3.1
  • networkit ==7.1
  • networkx ==2.8.5
  • nodeenv ==1.7.0
  • numba ==0.56.4
  • numexpr ==2.8.4
  • numpy ==1.23.1
  • ogb ==1.3.6
  • openpyxl ==3.1.2
  • opt-einsum ==3.3.0
  • optuna ==2.10.1
  • outdated ==0.2.2
  • pandas ==1.3.5
  • partd ==1.3.0
  • patsy ==0.5.3
  • pbr ==5.9.0
  • pexpect ==4.8.0
  • pgmpy ==0.1.21
  • pillow ==9.2.0
  • platformdirs ==2.5.4
  • plotly ==5.12.0
  • pooch ==1.7.0
  • portalocker ==2.7.0
  • pre-commit ==2.19.0
  • pre-commit-hooks ==4.2.0
  • prettytable ==3.3.0
  • progressbar2 ==4.2.0
  • prometheus-flask-exporter ==0.20.3
  • protobuf ==3.20.1
  • psutil ==5.9.4
  • ptyprocess ==0.7.0
  • pyarrow ==11.0.0
  • pyasn1 ==0.5.0
  • pyasn1-modules ==0.3.0
  • pydot ==1.4.2
  • pyflakes ==3.0.1
  • pygam ==0.8.0
  • pygments ==2.14.0
  • pygsp ==0.5.1
  • pykeen ==1.9.0
  • pynndescent ==0.5.8
  • pyparsing ==3.0.9
  • pyperclip ==1.8.2
  • pyrsistent ==0.19.2
  • pysocks ==1.7.1
  • pystow ==0.4.6
  • python-igraph ==0.10.4
  • python-louvain ==0.16
  • python-utils ==3.5.2
  • pytorch-lightning ==2.0.0
  • pytz ==2022.1
  • querystring-parser ==1.2.4
  • ray ==2.4.0
  • rdkit-pypi ==2022.3.4
  • requests ==2.28.1
  • requests-oauthlib ==1.3.1
  • rexmex ==0.1.0
  • rsa ==4.9
  • scanpy ==1.9.3
  • scikit-learn ==1.1.2
  • scikit-multilearn ==0.2.0
  • scipy ==1.9.0
  • scprep ==1.2.2
  • seaborn ==0.11.2
  • session-info ==1.0.0
  • six ==1.16.0
  • sklearn ==0.0
  • skorch ==0.12.0
  • skrebate ==0.62
  • slingpy ==0.2.12
  • sortedcontainers ==2.4.0
  • sqlparse ==0.4.2
  • stdlib-list ==0.8.0
  • stevedore ==4.0.0
  • tabulate ==0.8.10
  • tasklogger ==1.2.0
  • tblib ==1.7.0
  • tensorboard ==2.13.0
  • tensorboard-data-server ==0.7.0
  • texttable ==1.6.4
  • threadpoolctl ==3.1.0
  • tokenizers ==0.13.2
  • toml ==0.10.2
  • toolz ==0.12.0
  • torch ==1.11.0+cu113
  • torch-cluster ==1.6.0
  • torch-geometric ==2.0.4
  • torch-max-mem ==0.0.2
  • torch-ppr ==0.0.8
  • torch-scatter ==2.0.9
  • torch-sparse ==0.6.14
  • torchaudio ==0.11.0+cu113
  • torcheval ==0.0.7
  • torchmetrics ==1.3.0
  • torchvision ==0.12.0+cu113
  • tqdm ==4.66.1
  • typing ==3.7.4.3
  • typing-extensions ==4.3.0
  • typing-inspect ==0.7.1
  • umap-learn ==0.5.3
  • urllib3 ==1.26.11
  • virtualenv ==20.16.7
  • wcwidth ==0.2.5
  • werkzeug ==2.2.2
  • wrapt ==1.15.0
  • xgboost ==1.7.2
  • xxhash ==3.2.0
  • yarl ==1.9.4
  • zict ==2.2.0
  • zipp ==3.8.1
requirements.txt pypi
  • Cython ==0.29.32
  • Deprecated ==1.2.13
  • Flask ==2.2.2
  • GPUtil ==1.4.0
  • HeapDict ==1.0.1
  • Markdown ==3.4.3
  • Pillow ==9.2.0
  • PyGSP ==0.5.1
  • PySocks ==1.7.1
  • Pygments ==2.14.0
  • Werkzeug ==2.2.2
  • absl-py ==1.4.0
  • aiohttp ==3.9.1
  • aiosignal ==1.3.1
  • anndata ==0.8.0
  • arboreto ==0.1.6
  • async-timeout ==4.0.3
  • attrs ==22.1.0
  • autoflake ==2.1.1
  • autopage ==0.5.1
  • bio ==1.5.6
  • biopython ==1.81
  • biothings-client ==0.2.6
  • biotite ==0.37.0
  • black ==22.3.0
  • bokeh ==2.4.3
  • cachetools ==5.3.0
  • causal-learn ==0.1.3.3
  • causalbench ==1.0.0
  • causaldag ==0.1a163
  • cdt ==0.6.0
  • certifi ==2022.6.15
  • cfgv ==3.3.1
  • charset-normalizer ==2.1.0
  • class-resolver ==0.3.10
  • click ==8.0.4
  • click-default-group ==1.2.2
  • cliff ==3.10.1
  • cloudpickle ==2.1.0
  • cmaes ==0.8.2
  • cmake ==3.24.0
  • cmd2 ==2.4.2
  • colorlog ==6.6.0
  • conditional-independence ==0.1a6
  • cycler ==0.11.0
  • dask ==2023.3.1
  • databricks-cli ==0.17.1
  • dataclasses ==0.6
  • dataclasses-json ==0.5.7
  • datatable ==1.0.0
  • decorator ==5.1.1
  • distlib ==0.3.6
  • distributed ==2023.3.1
  • docdata ==0.0.3
  • docker ==5.0.3
  • easydict ==1.10
  • einops ==0.4.1
  • et-xmlfile ==1.1.0
  • filelock ==3.8.0
  • fonttools ==4.34.4
  • frozendict ==2.3.6
  • frozenlist ==1.3.3
  • fsspec ==2023.3.0
  • future ==0.18.3
  • gdown ==4.6.6
  • gies ==0.0.1
  • google-auth ==2.18.1
  • google-auth-oauthlib ==1.0.0
  • gprofiler-official ==1.0.0
  • graphical-model-learning ==0.1a8
  • graphical-models ==0.1a19
  • graphtools ==1.5.3
  • graphviz ==0.20.1
  • grpcio ==1.50.0
  • gunicorn ==20.1.0
  • h5py ==3.8.0
  • identify ==2.5.21
  • idna ==3.3
  • igraph ==0.10.4
  • ilock ==1.0.3
  • ipdb ==0.13.13
  • isort ==5.10.1
  • itsdangerous ==2.1.2
  • joblib ==1.1.0
  • jsonschema ==4.17.0
  • kiwisolver ==1.4.4
  • lazypredict ==0.2.12
  • lightgbm ==3.3.3
  • lightning-utilities ==0.10.0
  • littleballoffur ==2.1.12
  • littleutils ==0.2.2
  • llvmlite ==0.39.1
  • lmdb ==1.4.1
  • locket ==1.0.0
  • lz4 ==4.3.2
  • magic-impute ==3.0.0
  • marshmallow ==3.17.0
  • marshmallow-enum ==1.5.1
  • matplotlib ==3.5.2
  • mlflow ==1.28.0
  • modAL ==0.4.1
  • more-click ==0.1.1
  • more-itertools ==8.14.0
  • msgpack ==1.0.4
  • multidict ==6.0.4
  • mygene ==3.2.2
  • mypy-extensions ==0.4.3
  • natsort ==8.3.1
  • networkit ==7.1
  • networkx ==2.8.5
  • nodeenv ==1.7.0
  • numba ==0.56.4
  • numexpr ==2.8.4
  • numpy ==1.23.1
  • ogb ==1.3.6
  • openpyxl ==3.1.2
  • opt-einsum ==3.3.0
  • optuna ==2.10.1
  • outdated ==0.2.2
  • packaging ==21.3
  • pandas ==1.3.5
  • partd ==1.3.0
  • patsy ==0.5.3
  • pbr ==5.9.0
  • pexpect ==4.8.0
  • pgmpy ==0.1.21
  • platformdirs ==2.5.4
  • plotly ==5.12.0
  • pooch ==1.7.0
  • portalocker ==2.7.0
  • pre-commit ==2.19.0
  • pre-commit-hooks ==4.2.0
  • prettytable ==3.3.0
  • progressbar2 ==4.2.0
  • prometheus-flask-exporter ==0.20.3
  • protobuf ==3.20.1
  • psutil ==5.9.4
  • ptyprocess ==0.7.0
  • pyarrow ==11.0.0
  • pyasn1 ==0.5.0
  • pyasn1-modules ==0.3.0
  • pydot ==1.4.2
  • pyflakes ==3.0.1
  • pygam ==0.8.0
  • pykeen ==1.9.0
  • pynndescent ==0.5.8
  • pyparsing ==3.0.9
  • pyperclip ==1.8.2
  • pyrsistent ==0.19.2
  • pystow ==0.4.6
  • python-igraph ==0.10.4
  • python-louvain ==0.16
  • python-utils ==3.5.2
  • pytorch-lightning ==2.0.0
  • pytz ==2022.1
  • querystring-parser ==1.2.4
  • ray ==2.4.0
  • rdkit-pypi ==2022.3.4
  • requests ==2.28.1
  • requests-oauthlib ==1.3.1
  • rexmex ==0.1.0
  • rsa ==4.9
  • scanpy ==1.9.3
  • scikit-learn ==1.1.2
  • scikit-multilearn ==0.2.0
  • scipy ==1.9.0
  • scprep ==1.2.2
  • seaborn ==0.11.2
  • session-info ==1.0.0
  • six ==1.16.0
  • sklearn ==0.0
  • skorch ==0.12.0
  • skrebate ==0.62
  • slingpy ==0.2.12
  • sortedcontainers ==2.4.0
  • sqlparse ==0.4.2
  • stdlib-list ==0.8.0
  • stevedore ==4.0.0
  • tabulate ==0.8.10
  • tasklogger ==1.2.0
  • tblib ==1.7.0
  • tensorboard ==2.13.0
  • tensorboard-data-server ==0.7.0
  • texttable ==1.6.4
  • threadpoolctl ==3.1.0
  • tokenizers ==0.13.2
  • toml ==0.10.2
  • toolz ==0.12.0
  • torch ==1.11.0
  • torch-cluster ==1.6.0
  • torch-geometric ==2.0.4
  • torch-max-mem ==0.0.2
  • torch-ppr ==0.0.8
  • torch-scatter ==2.0.9
  • torch-sparse ==0.6.14
  • torchaudio ==0.11.0
  • torcheval ==0.0.7
  • torchmetrics ==1.3.0
  • torchvision ==0.12.0
  • tqdm ==4.66.1
  • typing ==3.7.4.3
  • typing-inspect ==0.7.1
  • typing_extensions ==4.3.0
  • umap-learn ==0.5.3
  • urllib3 ==1.26.11
  • virtualenv ==20.16.7
  • wcwidth ==0.2.5
  • wrapt ==1.15.0
  • xgboost ==1.7.2
  • xxhash ==3.2.0
  • yarl ==1.9.4
  • zict ==2.2.0
  • zipp ==3.8.1

Score: -Infinity