Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/althonos/uniprot.rs

Rust data structures and parser for the Uniprot database(s).
bioinformatics rust-library swissprot uniprot uniprotkb uniref
Added: 11 months ago - Last Synced: 11 months ago - Created: January 10, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Rust
  • Commits: 114
  • Committers: 3
  • Issues: 2
  • Pull Requests: 20
  • Owner: althonos
  • Stars: 8
  • Forks: 1
  • Packages: 1
  • Downloads: 5,491
https://github.com/althonos/pyopal

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
bioinformatics cython-library cython-wrapper genomics needleman-wunsch python-bindings python-library sequence-alignment simd smith-waterman
Added: 11 months ago - Last Synced: 11 months ago - Created: October 04, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 64
  • Committers: 1
  • Issues: 6
  • Pull Requests: 1
  • Owner: althonos
  • Stars: 7
  • Forks: 1
  • Packages: 1
  • Downloads: 3,127
https://github.com/althonos/pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
bioinformatics cython-library genomics multiple-sequence-alignment python-bindings python-library sequence-alignment
Added: 11 months ago - Last Synced: 11 months ago - Created: July 28, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 83
  • Committers: 1
  • Issues: 4
  • Pull Requests: 0
  • Owner: althonos
  • Stars: 21
  • Forks: 3
  • Packages: 1
  • Downloads: 1,606
https://github.com/althonos/lightmotif

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
bioinformatics genomics pssm rust-library sequence-analysis sequence-motif simd
Added: 11 months ago - Last Synced: 11 months ago - Created: April 30, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Rust
  • Commits:
  • Committers:
  • Issues: 0
  • Pull Requests: 4
  • Owner: althonos
  • Stars: 36
  • Forks: 2
  • Packages: 6
  • Downloads: 13,920
https://github.com/althonos/peptides.py

Physicochemical properties, indices and descriptors for amino-acid sequences.
bioinformatics protein pure-python qsar-models sequence-analysis
Added: over 1 year ago - Last Synced: 11 months ago - Created: October 20, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 99
  • Committers: 1
  • Issues: 4
  • Pull Requests: 0
  • Owner: althonos
  • Stars: 57
  • Forks: 9
  • Packages: 1
  • Downloads: 549