https://github.com/althonos/pyfamsa
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
https://github.com/althonos/pyfamsa
Keywords
bioinformatics cython-library genomics multiple-sequence-alignment python-bindings python-library sequence-alignment
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
- Host: GitHub
- URL: https://github.com/althonos/pyfamsa
- Owner: althonos
- License: gpl-3.0
- Created: 2022-07-28T14:54:04.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2024-05-15T09:27:45.000Z (12 months ago)
- Last Synced: 2024-06-11T18:24:03.738Z (11 months ago)
- Topics: bioinformatics, cython-library, genomics, multiple-sequence-alignment, python-bindings, python-library, sequence-alignment
- Language: Python
- Homepage:
- Size: 130 KB
- Stars: 21
- Watchers: 3
- Forks: 3
- Open Issues: 1
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: COPYING
Owner metadata
- Name: Martin Larralde
- Login: althonos
- Email:
- Kind: user
- Description: PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.
- Website:
- Location: Heidelberg, Germany
- Twitter: althonos
- Company: EMBL / LUMC, @zellerlab
- Icon url: https://avatars.githubusercontent.com/u/8660647?u=194fbf9846310fda8a9e9d1288993cc967e28ef9&v=4
- Repositories: 91
- Last ynced at: 2024-06-11T15:48:47.831Z
- Profile URL: https://github.com/althonos
GitHub Events
Total
- Create event: 10
- Issues event: 7
- Release event: 7
- Watch event: 20
- Delete event: 3
- Issue comment event: 17
- Push event: 78
- Public event: 1
- Fork event: 3
Last Year
- Create event: 5
- Delete event: 1
- Fork event: 1
- Issue comment event: 17
- Issues event: 7
- Push event: 30
- Release event: 4
- Watch event: 8
Committers metadata
Last synced: about 2 years ago
Total Commits: 83
Total Committers: 1
Avg Commits per committer: 83.0
Development Distribution Score (DDS): 0.0
| Name | Commits | |
|---|---|---|
| Martin Larralde | m****e@e****e | 83 |
Committer domains:
- embl.de: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 4
Total pull requests: 0
Average time to close issues: about 2 months
Average time to close pull requests: N/A
Total issue authors: 4
Total pull request authors: 0
Average comments per issue: 4.5
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0
Past year issues: 4
Past year pull requests: 0
Past year average time to close issues: about 2 months
Past year average time to close pull requests: N/A
Past year issue authors: 4
Past year pull request authors: 0
Past year average comments per issue: 4.5
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- davidlougheed (1)
- felbecker (1)
- jlotthammer (1)
- maovshao (1)
Top Pull Request Authors
Top Issue Labels
- bug (2)
- enhancement (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 1,606 last-month
- Total dependent packages: 3
- Total dependent repositories: 0
- Total versions: 8
- Total maintainers: 1
pypi.org: pyfamsa
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
- Homepage: https://github.com/althonos/pyfamsa
- Documentation: https://pyfamsa.readthedocs.io/en/stable/
- Licenses: GPLv3
- Latest release: 0.4.0 (published about 1 year ago)
- Last Synced: 2024-06-11T19:10:01.031Z (11 months ago)
- Versions: 8
- Dependent Packages: 3
- Dependent Repositories: 0
- Downloads: 1,606 Last month
-
Rankings:
- Dependent packages count: 6.633%
- Downloads: 14.509%
- Stargazers count: 16.639%
- Average: 17.589%
- Forks count: 19.553%
- Dependent repos count: 30.611%
- Maintainers (1)
Dependencies
- auditwheel *
- codecov *
- coverage *
- cython *
- importlib-resources *
- semantic-version *
- setuptools >=46.4.0
- wheel *
- cython *
- ipykernel *
- ipython *
- nbsphinx *
- pygments *
- pygments-style-monokailight *
- recommonmark *
- semantic_version *
- setuptools >=46.4
- sphinx *
- importlib-resources * test
- KSXGitHub/github-actions-deploy-aur v2.2.5 composite
- actions-rs/toolchain v1 composite
- actions/checkout v3 composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v3 composite
- actions/upload-artifact v2 composite
- docker/setup-qemu-action v2 composite
- pypa/cibuildwheel v2.11.3 composite
- pypa/gh-action-pypi-publish master composite
- rasmus-saks/release-a-changelog-action v1.0.1 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- codecov/codecov-action v1 composite
Score: 10.475031911336824