Data

Tools

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Applications

Experiments

Open Sustainable Technology

https://github.com/nvladimus/npy2bdv

Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
bigdataviewer h5 hdf5 numpy
Added: over 1 year ago - Last Synced: 11 months ago - Created: August 20, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 110
  • Committers: 4
  • Issues: 8
  • Pull Requests: 5
  • Owner: nvladimus
  • Stars: 32
  • Forks: 12
  • Packages: 1
  • Downloads: 188
https://github.com/iannesbitt/readgssi

python tool to read and plot Geophysical Survey Systems Incorporated (GSSI) radar data
dzt georadar gpr ground-penetrating-radar gssi hdf5 plot python2 python3
Added: over 1 year ago - Last Synced: 11 months ago - Created: November 11, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 464
  • Committers: 7
  • Issues: 73
  • Pull Requests: 20
  • Owner: iannesbitt
  • Stars: 69
  • Forks: 24
  • Packages: 1
  • Downloads: 295
https://github.com/hdfgroup/hsds

Cloud-native, service based access to HDF data
asyncio aws data-analysis docker hdf5 multi-dimensional python scientific-data
Added: over 1 year ago - Last Synced: 11 months ago - Created: July 27, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1752
  • Committers: 34
  • Issues: 83
  • Pull Requests: 163
  • Owner: HDFGroup
  • Stars: 120
  • Forks: 52
  • Packages: 2
  • Downloads: 3,432
https://github.com/swiftsim/swiftsimio

Python library for reading SWIFT data. Uses unyt and h5py.
astrophysics cosmology hdf5 particle simulation sph
Added: over 1 year ago - Last Synced: 11 months ago - Created: March 11, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 659
  • Committers: 20
  • Issues: 46
  • Pull Requests: 77
  • Owner: SWIFTSIM
  • Stars: 14
  • Forks: 12
  • Packages: 1
  • Downloads: 929
https://github.com/h5io/h5io_browser

Easy navigation and data storage for HDF5
h5io hdf5
Added: over 1 year ago - Last Synced: 11 months ago - Created: December 28, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 23
  • Committers: 6
  • Issues: 2
  • Pull Requests: 39
  • Owner: h5io
  • Stars: 1
  • Forks: 2
  • Packages: 1
  • Downloads: 664
https://github.com/zincware/mdsuite

A post-processing engine for particle simulations
hdf5 molecular-dynamics particle-simulation python tensorflow
Added: over 1 year ago - Last Synced: 11 months ago - Created: June 01, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1353
  • Committers: 19
  • Issues: 41
  • Pull Requests: 69
  • Owner: zincware
  • Stars: 36
  • Forks: 7
  • Packages: 1
  • Downloads: 13
https://github.com/duqtools/imas2xarray

Imas2xarray is a python library for reading and writing IMAS data in hdf5 format using xarray
fusion-data hdf5 imas python xarray
Added: over 1 year ago - Last Synced: 11 months ago - Created: November 28, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 66
  • Committers: 3
  • Issues: 11
  • Pull Requests: 10
  • Owner: duqtools
  • Stars: 2
  • Forks: 0
  • Packages: 1
  • Downloads: 44
https://github.com/saalfeldlab/n5-ij

ImageJ convenience layer for N5
fiji fiji-plugin hdf5 n5 ome-zarr-converter zarr
Added: over 1 year ago - Last Synced: 11 months ago - Created: February 27, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Java
  • Commits: 394
  • Committers: 9
  • Issues: 1
  • Pull Requests: 3
https://github.com/marts/hdf5view

Simple Qt/Python based viewer for HDF5 files
data hdf5 management research viewer visualization
Added: over 1 year ago - Last Synced: 11 months ago - Created: December 15, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 50
  • Committers: 5
  • Issues: 5
  • Pull Requests: 5
  • Owner: marts
  • Stars: 26
  • Forks: 8
  • Packages: 1
  • Downloads: 235