https://github.com/vini2/phables
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
https://github.com/vini2/phables
Keywords
assembly-graphs bacteriophages bioinformatics genomics metagenomics
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
- Host: GitHub
- URL: https://github.com/vini2/phables
- Owner: Vini2
- License: mit
- Created: 2022-07-21T02:02:28.000Z (almost 3 years ago)
- Default Branch: develop
- Last Pushed: 2024-06-12T07:26:28.000Z (11 months ago)
- Last Synced: 2024-06-12T10:19:40.264Z (11 months ago)
- Topics: assembly-graphs, bacteriophages, bioinformatics, genomics, metagenomics
- Language: Python
- Homepage: https://phables.readthedocs.io/
- Size: 7.53 MB
- Stars: 64
- Watchers: 2
- Forks: 6
- Open Issues: 9
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Owner metadata
- Name: Vijini Mallawaarachchi
- Login: Vini2
- Email:
- Kind: user
- Description: Research Associate at Flinders University
- Website: vijinimallawaarachchi.com
- Location: Adelaide, Australia
- Twitter: viji112
- Company: Flinders University
- Icon url: https://avatars.githubusercontent.com/u/12206048?u=e49988ec8584d579593dba62b159d880d624dcd5&v=4
- Repositories: 7
- Last ynced at: 2023-03-03T12:55:36.791Z
- Profile URL: https://github.com/Vini2
GitHub Events
Total
- Create event: 17
- Issues event: 42
- Release event: 16
- Watch event: 56
- Delete event: 3
- Issue comment event: 46
- Public event: 1
- Push event: 323
- Pull request event: 24
- Fork event: 5
Last Year
- Create event: 11
- Delete event: 2
- Fork event: 5
- Issue comment event: 46
- Issues event: 37
- Pull request event: 24
- Push event: 156
- Release event: 11
- Watch event: 50
Committers metadata
Last synced: over 1 year ago
Total Commits: 545
Total Committers: 2
Avg Commits per committer: 272.5
Development Distribution Score (DDS): 0.066
Commits in past year: 226
Committers in past year: 2
Avg Commits per committer in past year: 113.0
Development Distribution Score (DDS) in past year: 0.159
| Name | Commits | |
|---|---|---|
| Vijini Mallawaarachchi | v****i@g****m | 509 |
| Michael Roach | b****e@g****m | 36 |
Committer domains:
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 37
Total pull requests: 15
Average time to close issues: about 1 month
Average time to close pull requests: about 22 hours
Total issue authors: 15
Total pull request authors: 3
Average comments per issue: 2.54
Average comments per pull request: 0.13
Merged pull request: 15
Bot issues: 0
Bot pull requests: 0
Past year issues: 26
Past year pull requests: 8
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 1 day
Past year issue authors: 15
Past year pull request authors: 3
Past year average comments per issue: 3.42
Past year average comments per pull request: 0.0
Past year merged pull request: 8
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- Vini2 (18)
- pdec (3)
- minhtrung1997 (2)
- rdenise (2)
- ZarulHanifah (2)
- ellasiera (1)
- Evapatrick (1)
- GeoMicroSoares (1)
- ilnamkang (1)
- ivelsko (1)
- jonye123 (1)
- kalonji08 (1)
- MJNT1999 (1)
- shenwei356 (1)
- xtc2002 (1)
Top Pull Request Authors
- beardymcjohnface (10)
- Vini2 (4)
- linsalrob (1)
Top Issue Labels
- enhancement (20)
- documentation (3)
- bug (2)
- question (2)
- help wanted (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 57 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 22
- Total maintainers: 1
pypi.org: phables
Phables: from fragmented assemblies to high-quality bacteriophage genomes
- Homepage: https://github.com/Vini2/phables
- Documentation: https://phables.readthedocs.io/
- Licenses: MIT License
- Latest release: 1.3.2 (published about 1 year ago)
- Last Synced: 2024-06-12T04:16:11.794Z (11 months ago)
- Versions: 22
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 57 Last month
-
Rankings:
- Stargazers count: 10.065%
- Dependent packages count: 10.126%
- Average: 16.611%
- Forks count: 16.87%
- Dependent repos count: 21.535%
- Downloads: 24.461%
- Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- codecov/codecov-action v3 composite
- Jinja2 >=2.10.2
- Markdown >=3.2.1,<3.4
- PyYAML >=5.2
- babel >=2.9.0
- click >=7.0
- ghp-import >=1.0
- importlib_metadata >=4.3
- jinja2 ==3.0.3
- mdx_gh_links >=0.2
- mergedeep >=1.3.4
- mkdocs >=1.3.1
- mkdocs-material *
- mkdocs-redirects >=1.0.1
- packaging >=20.5
- pygments >=2.12
- pymdown-extensions *
- pyyaml_env_tag >=0.1
- watchdog >=2.0.0
- biopython *
- click *
- gurobipy *
- more-itertools *
- networkx *
- numpy *
- pandas *
- pysam *
- python-igraph *
- scipy *
- tqdm *
- actions/checkout v3 composite
- github/codeql-action/analyze v2 composite
- github/codeql-action/autobuild v2 composite
- github/codeql-action/init v2 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- pypa/gh-action-pypi-publish 27b31702a0e7fc50959f5ad993c78deac1bdfc29 composite
Score: 9.061144065614055