https://github.com/rki-mf1/breakfast
breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).
https://github.com/rki-mf1/breakfast
Keywords
bioinformatics clustering
Keywords from Contributors
genome
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).
- Host: GitHub
- URL: https://github.com/rki-mf1/breakfast
- Owner: rki-mf1
- License: mit
- Created: 2021-10-22T11:48:16.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2022-10-04T11:29:15.000Z (over 2 years ago)
- Last Synced: 2024-06-04T00:35:40.293Z (11 months ago)
- Topics: bioinformatics, clustering
- Language: Python
- Homepage:
- Size: 5.49 MB
- Stars: 10
- Watchers: 4
- Forks: 1
- Open Issues: 6
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
Owner metadata
- Name: RKI MF1 Bioinformatics
- Login: rki-mf1
- Email:
- Kind: organization
- Description: Bioinformatics code of MF1
- Website:
- Location: Germany
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/90636343?v=4
- Repositories: 9
- Last ynced at: 2023-03-05T21:53:14.443Z
- Profile URL: https://github.com/rki-mf1
GitHub Events
Total
- Create event: 26
- Release event: 7
- Issues event: 9
- Watch event: 11
- Delete event: 11
- Issue comment event: 3
- Public event: 1
- Push event: 98
- Pull request review event: 1
- Pull request review comment event: 1
- Pull request event: 19
- Fork event: 1
Last Year
- Fork event: 1
- Issues event: 1
Committers metadata
Last synced: over 1 year ago
Total Commits: 150
Total Committers: 7
Avg Commits per committer: 21.429
Development Distribution Score (DDS): 0.52
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Huska, Matthew | H****M@r****e | 72 |
| denisbeslic | d****c@o****m | 29 |
| BeslicD | b****d@h****l | 23 |
| Beslic | b****d@s****l | 15 |
| BeslicD | b****d@h****l | 7 |
| dbeslic | d****e@h****e | 3 |
| Matt Huska | m****a@g****m | 1 |
Committer domains:
- hotmail.de: 1
- rki.de: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 8
Total pull requests: 12
Average time to close issues: 7 days
Average time to close pull requests: 3 days
Total issue authors: 2
Total pull request authors: 2
Average comments per issue: 0.0
Average comments per pull request: 0.5
Merged pull request: 11
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 0.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- denisbeslic (6)
- matthuska (2)
Top Pull Request Authors
- matthuska (9)
- denisbeslic (3)
Top Issue Labels
- enhancement (4)
- bug (2)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 37 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 7
- Total maintainers: 3
pypi.org: breakfast
breakfast: fast putative outbreak cluster and infection chain detection using SNPs
- Homepage: https://github.com/rki-mf1/breakfast
- Documentation: https://breakfast.readthedocs.io/
- Licenses: MIT
- Latest release: 0.4.3 (published over 2 years ago)
- Last Synced: 2024-06-04T00:22:57.947Z (11 months ago)
- Versions: 7
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 37 Last month
-
Rankings:
- Dependent packages count: 10.052%
- Stargazers count: 17.066%
- Average: 20.727%
- Dependent repos count: 21.642%
- Forks count: 22.608%
- Downloads: 32.267%
- Maintainers (3)
Dependencies
- atomicwrites 1.4.0 develop
- attrs 21.4.0 develop
- black 22.3.0 develop
- coverage 6.4.1 develop
- flake8 4.0.1 develop
- flake8-black 0.3.2 develop
- flake8-import-order 0.18.1 develop
- iniconfig 1.1.1 develop
- mccabe 0.6.1 develop
- mypy-extensions 0.4.3 develop
- packaging 21.3 develop
- pathspec 0.9.0 develop
- platformdirs 2.5.2 develop
- pluggy 1.0.0 develop
- py 1.11.0 develop
- pycodestyle 2.8.0 develop
- pyflakes 2.4.0 develop
- pyparsing 3.0.8 develop
- pytest 7.1.2 develop
- pytest-cov 3.0.0 develop
- tomli 2.0.1 develop
- click 8.1.3
- colorama 0.4.4
- joblib 1.1.0
- networkx 2.8.4
- numpy 1.22.3
- pandas 1.4.2
- python-dateutil 2.8.2
- pytz 2022.1
- scikit-learn 1.0.2
- scipy 1.8.0
- six 1.16.0
- threadpoolctl 3.1.0
- black ^22.3.0 develop
- coverage ^6.3.2 develop
- flake8 ^4.0.1 develop
- flake8-black ^0.3.2 develop
- flake8-import-order ^0.18.1 develop
- pytest ^7.1.2 develop
- pytest-cov ^3.0.0 develop
- click ^8.1.3
- networkx ^2.8
- numpy ^1.22.3
- pandas ^1.4.2
- python ^3.10
- scikit-learn ^1.0.2
- scipy ^1.8.0
Score: 8.432070937999402