Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/ljvmiranda921/pyswarms

PySwarms: a research toolkit for Particle Swarm Optimization in Python - Published in JOSS (2018)
algorithm discrete-optimization global-optimization machine-learning metaheuristics optimization optimization-algorithms optimization-tools particle-swarm-optimization pso swarm-intelligence
Added: 2 months ago - Last Synced: 2 months ago - Created: July 12, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 364
  • Committers: 44
  • Issues: 90
  • Pull Requests: 39
  • Owner: ljvmiranda921
  • Stars: 1364
  • Forks: 339
  • Packages: 16
  • Downloads: 71,898
https://github.com/terrytangyuan/autoplotly

autoplotly: An R package for automatic generation of interactive visualizations for statistical results - Published in JOSS (2018)
data-visualization ggplot2 interactive-visualizations machine-learning plotly plotlyjs rstats statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 07, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 62
  • Committers: 2
  • Issues: 5
  • Pull Requests: 2
  • Owner: terrytangyuan
  • Stars: 92
  • Forks: 11
  • Packages: 3
  • Downloads: 779
https://github.com/sepandhaghighi/pycm

PyCM: Multiclass confusion matrix library in Python - Published in JOSS (2018)
accuracy ai artificial-intelligence classification confusion-matrix data data-analysis data-mining data-science deep-learning deeplearning evaluation machine-learning mathematics matrix ml multiclass-classification neural-network statistical-analysis statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 22, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2864
  • Committers: 18
  • Issues: 42
  • Pull Requests: 230
  • Owner: sepandhaghighi
  • Stars: 1489
  • Forks: 125
  • Packages: 2
  • Downloads: 183,271
https://github.com/raamana/graynet

graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
anatomical-mri cortical-network cortical-thickness feature-extraction freesurfer graph gray-matter machine-learning mindboggle network-analysis neuroimaging neuroscience structural-mri thickness vbm voxel-based
Added: 2 months ago - Last Synced: 2 months ago - Created: July 27, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 297
  • Committers: 3
  • Issues: 25
  • Pull Requests: 39
  • Owner: raamana
  • Stars: 38
  • Forks: 8
  • Packages: 1
  • Downloads: 102
https://github.com/fatiando/verde

Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)
earth-science fatiando-a-terra geophysics geoscience geospatial interpolation machine-learning python python3 scipy scipy-stack
Added: 2 months ago - Last Synced: 2 months ago - Created: April 25, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 337
  • Committers: 15
  • Issues: 61
  • Pull Requests: 218
  • Owner: fatiando
  • Stars: 642
  • Forks: 74
  • Packages: 3
  • Downloads: 9,768
https://github.com/larq/larq

Larq: An Open-Source Library for Training Binarized Neural Networks - Published in JOSS (2020)
binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow
Added: 2 months ago - Last Synced: 2 months ago - Created: March 18, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 735
  • Committers: 18
  • Issues: 46
  • Pull Requests: 180
  • Owner: larq
  • Stars: 718
  • Forks: 85
  • Packages: 1
  • Downloads: 2,574
https://github.com/mlr-org/mcboost

mcboost: Multi-Calibration Boosting for R - Published in JOSS (2021)
bias-correction bias-detection classification ethics fairness fairness-ai fairness-ml machine-learning post-processing responsible-ai
Added: 2 months ago - Last Synced: 2 months ago - Created: December 28, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 298
  • Committers: 8
  • Issues: 38
  • Pull Requests: 8
  • Owner: mlr-org
  • Stars: 33
  • Forks: 4
  • Packages: 1
  • Downloads: 325
https://github.com/saran-nns/sorn

sorn: A Python package for Self Organizing Recurrent Neural Network - Published in JOSS (2021)
associative-networks autonomous-agents bolzmann-machines brain-inspired-computing complex-networks cortical-learning cortical-network hebbian-learning hopfield-network machine-learning neuro-computing neuroinformatics neuroplasticity point-neurons reinforcement-learning reservoir-computing self-organizing-criticality self-organizing-network sorn
Added: 2 months ago - Last Synced: 2 months ago - Created: March 09, 2019

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 948
  • Committers: 2
  • Issues: 23
  • Pull Requests: 24
  • Owner: Saran-nns
  • Stars: 38
  • Forks: 3
  • Packages: 1
  • Downloads: 799
https://github.com/dmey/synthia

Synthia: multidimensional synthetic data generation in Python - Published in JOSS (2021)
augmentation climate copula data-augmentation data-generation data-generator data-modelling data-science dependency-analysis dependency-modeling finance fpca functional-data machine-learning oversampling principal-component-analysis statistics synthetic-data weather xarray
Added: 2 months ago - Last Synced: 2 months ago - Created: March 01, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 59
  • Committers: 4
  • Issues: 11
  • Pull Requests: 21
  • Owner: dmey
  • Stars: 64
  • Forks: 10
  • Packages: 1
  • Downloads: 73
https://github.com/AndreWeiner/flowtorch

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows - Published in JOSS (2021)
cnm csv davis dmd dynamic-mode-decomposition hdf5 ipsp jupyter machine-learning netcdf openfoam pod proper-orthogonal-decomposition pytorch tau
Added: 2 months ago - Last Synced: 2 months ago - Created: June 24, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 289
  • Committers: 7
  • Issues: 44
  • Pull Requests: 9
https://github.com/nedtaylor/athena

ATHENA: A Fortran package for neural networks - Published in JOSS (2024)
cnn convolution convolutional-neural-networks deep-learning feed-forward-neural-networks fortran fortran-package-manager machine-learning neural-network
Added: 2 months ago - Last Synced: 2 months ago - Created: February 17, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Fortran
  • Commits: 860
  • Committers: 3
  • Issues: 29
  • Pull Requests: 20
  • Owner: nedtaylor
  • Stars: 24
  • Forks: 2
  • Packages: 0
https://github.com/ehsangharibnezhad/telescopeml

TelescopeML -- I. An End-to-End Python Package for Interpreting Telescope Datasets through Training Machine Learning Models, Generating Statistical Reports, and Visualizing Results - Published in JOSS (2024)
astronomy atmospheric-modelling convolutional-neural-networks machine-learning star telescope
Added: 2 months ago - Last Synced: 2 months ago - Created: June 19, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 421
  • Committers: 3
  • Issues: 0
  • Pull Requests: 155
https://github.com/paucablop/chemotools

chemotools: A Python Package that Integrates Chemometrics and scikit-learn - Published in JOSS (2024)
artificial-intelligence autoencoders chemometrics deep-learning hacktoberfest ir-spectroscopy machine-learning multivariate-analysis nir-spectroscopy python raman-spectroscopy scikit-learn sklearn spectra spectroscopy
Added: 2 months ago - Last Synced: 2 months ago - Created: January 26, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 517
  • Committers: 3
  • Issues: 57
  • Pull Requests: 212
  • Owner: paucablop
  • Stars: 63
  • Forks: 10
  • Packages: 1
  • Downloads: 1,895
https://github.com/vegewaterdynamics/motrainer

MOTrainer: Distributed Measurement Operator Trainer for Data Assimilation Applications - Published in JOSS (2024)
data-assimilation distributed-computing kalman-filter machine-learning
Added: 2 months ago - Last Synced: 2 months ago - Created: September 30, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 307
  • Committers: 6
  • Issues: 53
  • Pull Requests: 64
https://github.com/scverse/anndata

anndata: Access and store annotated data matrices - Published in JOSS (2024)
anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics
Added: 2 months ago - Last Synced: 2 months ago - Created: August 11, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1543
  • Committers: 56
  • Issues: 389
  • Pull Requests: 1388
  • Owner: scverse
  • Stars: 667
  • Forks: 175
  • Packages: 1
  • Downloads: 962,749
https://github.com/sisl/expfamilypca.jl

ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis - Published in JOSS (2025)
compression compression-algorithm denoising dimensionality-reduction epca exponential-family interpretability julia machine-learning pca principal-component-analysis reinforcement-learning signal-processing
Added: 2 months ago - Last Synced: 2 months ago - Created: February 24, 2024

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 243
  • Committers: 4
  • Issues: 5
  • Pull Requests: 25
  • Owner: sisl
  • Stars: 10
  • Forks: 2
  • Packages: 1
  • Downloads: 14
https://github.com/cambridge-iccs/ftorch

FTorch: a library for coupling PyTorch models to Fortran - Published in JOSS (2025)
deep-learning fortran hacktoberfest interoperability libtorch machine-learning python pytorch torch
Added: 2 months ago - Last Synced: 2 months ago - Created: October 14, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Fortran
  • Commits: 408
  • Committers: 17
  • Issues: 166
  • Pull Requests: 303
https://github.com/emsl-computing/pore2chip

Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design - Published in JOSS (2025)
data-analysis data-visualization experimental-design flow lab lab-on-chip machine-learning microfluidics-chip-enrichment model-data-fusion neural-networks openpnm pore-network porous-materials porous-media python reactive-transport scientific-visualization soil terraforms xct
Added: 2 months ago - Last Synced: 2 months ago - Created: July 03, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 115
  • Committers: 5
  • Issues: 8
  • Pull Requests: 12
https://github.com/cthoyt/chembl-downloader

Improving reproducibility of cheminformatics workflows with chembl-downloader - Published in JOSS (2025)
bioinformatics chembl cheminformatics chemogenomics chemometrics machine-learning pharmacology proteochemometrics python reproducible-research toxicology
Added: 2 months ago - Last Synced: 2 months ago - Created: July 27, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 159
  • Committers: 4
  • Issues: 7
  • Pull Requests: 27
  • Owner: cthoyt
  • Stars: 80
  • Forks: 15
  • Packages: 2
  • Downloads: 9,064