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Open Sustainable Technology

https://github.com/biopragmatics/pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
bioinformatics biopragmatics bioregistry obo obofoundry ontologies
Added: over 1 year ago - Last Synced: about 1 year ago - Created: August 20, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1125
  • Committers: 7
  • Issues: 104
  • Pull Requests: 94
https://github.com/ncbo/bioportal_web_ui

A Rails application for biological ontologies
annotation bioinformatics bioportal metadata obo ontology-repository open-science open-source owl rdf ruby-on-rails semantic-web
Added: over 1 year ago - Last Synced: about 1 year ago - Created: July 27, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? true
  • Main Language: Ruby
  • Commits: 4438
  • Committers: 17
  • Issues: 63
  • Pull Requests: 47
  • Owner: ncbo
  • Stars: 20
  • Forks: 2
  • Packages: 0
https://github.com/protegeproject/webprotege

The webprotege code base
knowledge-graph knowledge-management obo ontologies ontology ontology-engineering owl rdf semantics webapp
Added: over 1 year ago - Last Synced: about 1 year ago - Created: August 10, 2013

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Java
  • Commits: 5412
  • Committers: 17
  • Issues: 92
  • Pull Requests: 18
https://github.com/pato-ontology/pato

PATO - the Phenotype And Trait Ontology
obo obofoundry ontology phenotypes qualities quantities semantic-web standards trait-ontology units
Added: over 1 year ago - Last Synced: about 1 year ago - Created: June 09, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Makefile
  • Commits: 544
  • Committers: 35
  • Issues: 57
  • Pull Requests: 43
https://github.com/bio-ontology-research-group/unit-ontology

An ontology of units of measurements
obo obofoundry ontology units-of-measurement
Added: over 1 year ago - Last Synced: about 1 year ago - Created: April 28, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Makefile
  • Commits: 156
  • Committers: 10
  • Issues: 67
  • Pull Requests: 10
https://github.com/geneontology/go-ontology

Source ontology files for the Gene Ontology
functional-annotation gene-ontology geneontology go obo obofoundry ontology owl
Added: over 1 year ago - Last Synced: about 1 year ago - Created: June 19, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Makefile
  • Commits: 11041
  • Committers: 51
  • Issues: 57
  • Pull Requests: 51
https://github.com/evidenceontology/evidenceontology

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.
annotation evidence obo obofoundry ontology owl
Added: over 1 year ago - Last Synced: about 1 year ago - Created: July 03, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 602
  • Committers: 22
  • Issues: 176
  • Pull Requests: 12
https://github.com/planteome/plant-experimental-conditions-ontology

Repository for the Plant Experimental Conditions Ontology
exposures obo obofoundry owl plant-treatments
Added: over 1 year ago - Last Synced: about 1 year ago - Created: July 27, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 227
  • Committers: 13
  • Issues: 90
  • Pull Requests: 20
  • Owner: Planteome
  • Stars: 9
  • Forks: 5
  • Packages: 0
https://github.com/obofoundry/obofoundry.github.io

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
annotation biocuration bioinformatics life-sciences metadata obo obofoundry ontology ontology-registry open-science open-source semantic-web
Added: over 1 year ago - Last Synced: about 1 year ago - Created: July 29, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2928
  • Committers: 157
  • Issues: 43
  • Pull Requests: 66
  • Owner: OBOFoundry
  • Stars: 159
  • Forks: 199
  • Packages: 0
https://github.com/mgijax/mammalian-phenotype-ontology

Standard terms for annotating mammalian phenotypic data
json mammals obo obofoundry ontology owl phenotype phenotyping
Added: over 1 year ago - Last Synced: about 1 year ago - Created: August 11, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Makefile
  • Commits: 2664
  • Committers: 24
  • Issues: 176
  • Pull Requests: 12
  • Owner: mgijax
  • Stars: 19
  • Forks: 6
  • Packages: 0
https://github.com/obophenotype/human-phenotype-ontology

Ontology for the description of human clinical features
hpo monarchinitiative obo obofoundry ontologies ontology owl phenotype phenotyping semantic-web
Added: over 1 year ago - Last Synced: about 1 year ago - Created: August 19, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Makefile
  • Commits: 7226
  • Committers: 47
  • Issues: 113
  • Pull Requests: 1
https://github.com/rsc-ontologies/rxno

Name Reaction Ontology
molecular-processes obo obofoundry owl reaction-ontology
Added: over 1 year ago - Last Synced: about 1 year ago - Created: August 24, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: /projects/review
  • Commits: 118
  • Committers: 12
  • Issues: 39
  • Pull Requests: 19
https://github.com/rsc-ontologies/rsc-cmo

Chemical Methods Ontology
chemical-methods-ontology chromatography obo obofoundry ontology owl
Added: over 1 year ago - Last Synced: about 1 year ago - Created: August 24, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: /projects/review
  • Commits: 52
  • Committers: 8
  • Issues: 32
  • Pull Requests: 7
https://github.com/incatools/ontology-development-kit

Bootstrap an OBO Library ontology
continuous-integration obo obofoundry ontology owl protege robot travis
Added: over 1 year ago - Last Synced: about 1 year ago - Created: December 15, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jinja
  • Commits: 1282
  • Committers: 40
  • Issues: 72
  • Pull Requests: 49
  • Owner: INCATools
  • Stars: 209
  • Forks: 53
  • Packages: 0
https://github.com/proconsortium/proteinontology


biomedical-ontologies obo obofoundry protein-ontology
Added: over 1 year ago - Last Synced: about 1 year ago - Created: August 18, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 37
  • Committers: 4
  • Issues: 109
  • Pull Requests: 18
https://github.com/mobiusklein/psims

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML
mzidentml mzml obo xml-serialization
Added: over 1 year ago - Last Synced: about 1 year ago - Created: December 19, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 450
  • Committers: 4
  • Issues: 17
  • Pull Requests: 5
  • Owner: mobiusklein
  • Stars: 19
  • Forks: 9
  • Packages: 1
  • Downloads: 7,688
https://github.com/obi-ontology/obi

The Ontology for Biomedical Investigations
bioinformatics obo obofoundry ontology owl semantic-web
Added: over 1 year ago - Last Synced: about 1 year ago - Created: February 27, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1026
  • Committers: 39
  • Issues: 148
  • Pull Requests: 44
https://github.com/display-lab/psdo

Performance Summary Display Ontology
obo obofoundry ontology owl
Added: over 1 year ago - Last Synced: about 1 year ago - Created: July 11, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Ruby
  • Commits: 92
  • Committers: 9
  • Issues: 83
  • Pull Requests: 40
https://github.com/aedera/anc2vec

Unsupervised neural network for learning embeddings of GO terms.
autoencoder embeddings gene-ontology go neural-network obo protein-function protein-protein-interaction
Added: over 1 year ago - Last Synced: about 1 year ago - Created: February 20, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 119
  • Committers: 1
  • Issues: 2
  • Pull Requests: 0
  • Owner: aedera
  • Stars: 14
  • Forks: 6
  • Packages: 0
https://github.com/related-sciences/nxontology-data

NXOntology data: making ontologies accessible as simple JSON files
graphs hierarchies network-biology networks networkx nxontology obo ontologies pubchem python taxonomies
Added: over 1 year ago - Last Synced: about 1 year ago - Created: March 23, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 109
  • Committers: 4
  • Issues: 9
  • Pull Requests: 14