Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/aedera/anc2vec

Unsupervised neural network for learning embeddings of GO terms.
autoencoder embeddings gene-ontology go neural-network obo protein-function protein-protein-interaction
Added: over 1 year ago - Last Synced: 11 months ago - Created: February 20, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 119
  • Committers: 1
  • Issues: 2
  • Pull Requests: 0
  • Owner: aedera
  • Stars: 14
  • Forks: 6
  • Packages: 0
https://github.com/leonweber/pedl

Search the biomedical literature for protein interactions and protein associations
bioinformatics deep-learning protein-protein-interaction text-mining
Added: over 1 year ago - Last Synced: 11 months ago - Created: May 12, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 108
  • Committers: 6
  • Issues: 0
  • Pull Requests: 7
  • Owner: leonweber
  • Stars: 11
  • Forks: 2
  • Packages: 1
  • Downloads: 42
https://github.com/dwhswenson/contact_map

Contact map analysis for biomolecules; based on MDTraj
biochemistry bioinformatics computational-biology molecular-dynamics protein-ligand-interactions protein-protein-interaction
Added: over 1 year ago - Last Synced: 11 months ago - Created: February 08, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 483
  • Committers: 4
  • Issues: 28
  • Pull Requests: 80
  • Owner: dwhswenson
  • Stars: 38
  • Forks: 15
  • Packages: 2
  • Downloads: 98