https://github.com/marvinquiet/cellcano
Supervised cell type identification for scATAC-seq data
https://github.com/marvinquiet/cellcano
Keywords
bioinformatics cell-type-classification cell-type-identification celltype-annotation single-cell supervised-classification-methods
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Supervised cell type identification for scATAC-seq data
- Host: GitHub
- URL: https://github.com/marvinquiet/cellcano
- Owner: marvinquiet
- License: mit
- Created: 2022-01-17T21:24:16.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2023-08-23T14:42:29.000Z (over 1 year ago)
- Last Synced: 2024-06-04T15:12:28.097Z (11 months ago)
- Topics: bioinformatics, cell-type-classification, cell-type-identification, celltype-annotation, single-cell, supervised-classification-methods
- Language: Python
- Homepage: https://marvinquiet.github.io/Cellcano/
- Size: 1.48 MB
- Stars: 10
- Watchers: 4
- Forks: 2
- Open Issues: 2
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Wenjing Ma
- Login: marvinquiet
- Email:
- Kind: user
- Description: 4th-year CSI Ph.D. student on BMI track at Emory University advised by Dr. Hao Wu || single-cell epigenetics
- Website: https://marvinquiet.github.io/
- Location: Emory University
- Twitter: marvinquiet
- Company: @haowulab
- Icon url: https://avatars.githubusercontent.com/u/7233574?u=95ea69de10bad07448014a9451932467c3aa4912&v=4
- Repositories: 6
- Last ynced at: 2023-02-28T02:55:22.498Z
- Profile URL: https://github.com/marvinquiet
GitHub Events
Total
- Create event: 4
- Release event: 2
- Issues event: 15
- Watch event: 8
- Delete event: 1
- Issue comment event: 26
- Public event: 1
- Push event: 27
- Pull request event: 5
- Fork event: 3
Last Year
- Fork event: 2
- Issue comment event: 22
- Issues event: 14
- Pull request event: 1
- Push event: 3
- Watch event: 4
Committers metadata
Last synced: about 1 year ago
Total Commits: 72
Total Committers: 5
Avg Commits per committer: 14.4
Development Distribution Score (DDS): 0.333
Commits in past year: 8
Committers in past year: 3
Avg Commits per committer in past year: 2.667
Development Distribution Score (DDS) in past year: 0.375
| Name | Commits | |
|---|---|---|
| MarvinQuiet | w****a@e****u | 48 |
| MarvinQuiet | m****3@1****m | 16 |
| jiaying.lu | l****3@f****m | 5 |
| Wenjing Ma | w****a@u****u | 2 |
| Jiaying.Lu(卢嘉颖) | j****u@e****u | 1 |
Committer domains:
- emory.edu: 2
- umich.edu: 1
- foxmail.com: 1
- 126.com: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 10
Total pull requests: 4
Average time to close issues: about 1 month
Average time to close pull requests: about 6 hours
Total issue authors: 6
Total pull request authors: 3
Average comments per issue: 2.3
Average comments per pull request: 1.5
Merged pull request: 3
Bot issues: 0
Bot pull requests: 0
Past year issues: 8
Past year pull requests: 1
Past year average time to close issues: 26 days
Past year average time to close pull requests: N/A
Past year issue authors: 5
Past year pull request authors: 1
Past year average comments per issue: 2.25
Past year average comments per pull request: 6.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- QuietgraceH (3)
- marvinquiet (2)
- nleroy917 (2)
- CarbonBlaack (1)
- lujiaying (1)
- Yijia-Jiang (1)
Top Pull Request Authors
- lujiaying (2)
- nleroy917 (1)
- marvinquiet (1)
Top Issue Labels
- question (1)
- help wanted (1)
Top Pull Request Labels
- enhancement (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 66 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 7
- Total maintainers: 1
pypi.org: cellcano
Cellcano is for supervised cell type identification (celltyping) in single-cell genomics.
- Homepage: https://github.com/marvinquiet/Cellcano
- Documentation: https://marvinquiet.github.io/Cellcano/
- Licenses: MIT
- Latest release: 1.0.4 (published almost 3 years ago)
- Last Synced: 2024-06-04T15:03:14.545Z (11 months ago)
- Versions: 7
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 66 Last month
-
Rankings:
- Dependent packages count: 10.027%
- Stargazers count: 17.677%
- Forks count: 19.107%
- Average: 19.526%
- Dependent repos count: 21.67%
- Downloads: 29.147%
- Maintainers (1)
Dependencies
- anndata *
- h5py *
- keras *
- numpy *
- rpy2 *
- scanpy *
- six *
- tensorflow *
Score: 8.313852267398207