Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/rki-mf1/breakfast

breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).
bioinformatics clustering
Added: over 1 year ago - Last Synced: 11 months ago - Created: October 22, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 150
  • Committers: 7
  • Issues: 8
  • Pull Requests: 12
  • Owner: rki-mf1
  • Stars: 10
  • Forks: 1
  • Packages: 1
  • Downloads: 37
https://github.com/snaketron/clustirr

Clustering of immune receptor repertoires
b-cell-receptor bioinformatics clustering immunoinformatics immunology quantitative-methods rep-seq repertoire-analysis t-cell-receptor
Added: over 1 year ago - Last Synced: 11 months ago - Created: March 09, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 347
  • Committers: 7
  • Issues: 43
  • Pull Requests: 0
  • Owner: snaketron
  • Stars: 2
  • Forks: 0
  • Packages: 1
  • Downloads: 901
https://github.com/getrayo/rayo.js

Micro framework for Node.js
bridge cluster clustered-servers clustering handler http http-server middleware nodejs performance rayo router routing server stack webserver
Added: over 1 year ago - Last Synced: 11 months ago - Created: May 10, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: JavaScript
  • Commits: 183
  • Committers: 5
  • Issues: 136
  • Pull Requests: 142
  • Owner: GetRayo
  • Stars: 211
  • Forks: 6
  • Packages: 5
  • Downloads: 1,031
https://github.com/torognes/swarm

A robust and fast clustering method for amplicon-based studies
bioinformatics clustering fasta metabarcoding microbiome sequence
Added: over 1 year ago - Last Synced: 11 months ago - Created: November 10, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 2873
  • Committers: 9
  • Issues: 102
  • Pull Requests: 5
  • Owner: torognes
  • Stars: 119
  • Forks: 23
  • Packages: 1
https://github.com/core-bioinformatics/clustassess

Tools for assessing clustering robustness
bioinformatics clustering genomics machine-learning parameter-optimization robustness single-cell unsupervised-learning
Added: over 1 year ago - Last Synced: 11 months ago - Created: March 26, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 177
  • Committers: 4
  • Issues: 5
  • Pull Requests: 0
https://github.com/wenjiedu/pypots

A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputation, classification, clustering, forecasting, & anomaly detection on incomplete industrial (irregularly-sampled) multivariate TS with NaN missing values
classification clustering data-mining data-science deep-learning forecasting healthcare imputation incomplete industrial interpolation machine-learning missing-values missingness neural-network partially-observed-time-series pytorch science-research time-series time-series-analysis
Added: over 1 year ago - Last Synced: 11 months ago - Created: March 29, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 793
  • Committers: 8
  • Issues: 144
  • Pull Requests: 267
  • Owner: WenjieDu
  • Stars: 750
  • Forks: 72
  • Packages: 1
  • Downloads: 34,267
https://github.com/norwegianveterinaryinstitute/alppaca

A tooL for Prokaryotic Phylogeny And Clustering Analysis
clustering nextflow phylogeny pipeline
Added: over 1 year ago - Last Synced: 11 months ago - Created: August 14, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits: 525
  • Committers: 4
  • Issues: 84
  • Pull Requests: 84
https://github.com/tahiri-lab/phydbscan

phyDBSCAN: Building alternative phylogenetic trees using DBSCAN and Robinson and Foulds distance
bioinformatics classification clustering consensus-tree dbscan phylogeny robinson-foulds supertree
Added: over 1 year ago - Last Synced: 11 months ago - Created: October 22, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 43
  • Committers: 2
  • Issues: 0
  • Pull Requests: 1
https://github.com/jorisparet/partycls

Unsupervised learning of structure in systems of interacting particles.
clustering machine-learning molecular-dynamics physics python
Added: over 1 year ago - Last Synced: 11 months ago - Created: June 13, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 491
  • Committers: 4
  • Issues: 10
  • Pull Requests: 1
  • Owner: jorisparet
  • Stars: 11
  • Forks: 5
  • Packages: 1
  • Downloads: 21