Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/shakedzy/dython

dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
analysis correlation data modeling plot python roc
Added: 12 days ago - Last Synced: 12 days ago - Created: February 04, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 555
  • Committers: 19
  • Issues: 75
  • Pull Requests: 52
  • Owner: shakedzy
  • Stars: 508
  • Forks: 102
  • Packages: 9
  • Downloads: 68,403
https://github.com/cnes/lenapy

Lenapy: Enhancing xarray for multidimensional geophysical data analysis - Published in JOSS (2025)
geophysics gravity oceanography python xarray
Added: 17 days ago - Last Synced: 17 days ago - Created: April 22, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 0
  • Pull Requests: 4
  • Owner: CNES
  • Stars: 6
  • Forks: 3
  • Packages: 0
http://github.com/cdjellen/ndbc-api

ndbc-api: Accelerating oceanography and climate science research with Python - Published in JOSS (2024)
api climate noaa ocean python
Added: 2 months ago - Last Synced: 2 months ago - Created: May 25, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 198
  • Committers: 5
  • Issues: 13
  • Pull Requests: 71
  • Owner: CDJellen
  • Stars: 24
  • Forks: 5
  • Packages: 0
https://github.com/vida-nyu/reprozip

ReproZip: The Reproducibility Packer - Published in JOSS (2016)
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Added: 2 months ago - Last Synced: 2 months ago - Created: May 06, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2181
  • Committers: 16
  • Issues: 57
  • Pull Requests: 50
  • Owner: VIDA-NYU
  • Stars: 348
  • Forks: 36
  • Packages: 13
  • Downloads: 2,971
https://github.com/dib-lab/khmer

khmer release v2.1: software for biological sequence analysis - Published in JOSS (2017)
bioinformatics bloom-filter count-min-sketch dna graph-traversal k-mer python
Added: 2 months ago - Last Synced: 2 months ago - Created: May 15, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5159
  • Committers: 87
  • Issues: 70
  • Pull Requests: 48
  • Owner: dib-lab
  • Stars: 782
  • Forks: 297
  • Packages: 2
  • Downloads: 3,383
https://github.com/fatiando/verde

Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)
earth-science fatiando-a-terra geophysics geoscience geospatial interpolation machine-learning python python3 scipy scipy-stack
Added: 2 months ago - Last Synced: 2 months ago - Created: April 25, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 337
  • Committers: 15
  • Issues: 61
  • Pull Requests: 218
  • Owner: fatiando
  • Stars: 642
  • Forks: 74
  • Packages: 3
  • Downloads: 9,768
https://github.com/arviz-devs/arviz

ArviZ a unified library for exploratory analysis of Bayesian models in Python - Published in JOSS (2019)
bayesian closember python
Added: 2 months ago - Last Synced: 2 months ago - Created: July 29, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1562
  • Committers: 183
  • Issues: 161
  • Pull Requests: 293
  • Owner: arviz-devs
  • Stars: 1737
  • Forks: 458
  • Packages: 5
  • Downloads: 3,572,304
https://github.com/python-hydro/pyro2

pyro: a framework for hydrodynamics explorations and prototyping - Published in JOSS (2019)
advection astrophysical-simulation finite-volume finite-volume-methods hydrodynamics multigrid pde pyro python simulation solver
Added: 2 months ago - Last Synced: 2 months ago - Created: June 06, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 1649
  • Committers: 18
  • Issues: 41
  • Pull Requests: 361
  • Owner: python-hydro
  • Stars: 327
  • Forks: 129
  • Packages: 1
  • Downloads: 130
https://github.com/pmeal/porespy

PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images - Published in JOSS (2019)
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Added: 2 months ago - Last Synced: 2 months ago - Created: May 06, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 3761
  • Committers: 42
  • Issues: 181
  • Pull Requests: 221
  • Owner: PMEAL
  • Stars: 371
  • Forks: 110
  • Packages: 2
  • Downloads: 6,981
https://github.com/brandondube/prysm

prysm: A Python optics module - Published in JOSS (2019)
4d diffraction forbes-polynomial gpu-computing modeling mtf mtf-mapper optics phase-retrieval phasecam propagation psf python q-polynomial raytracing trioptics wavefront wavefront-sensing zernike zygo
Added: 2 months ago - Last Synced: 2 months ago - Created: February 13, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1607
  • Committers: 12
  • Issues: 91
  • Pull Requests: 13
  • Owner: brandondube
  • Stars: 315
  • Forks: 53
  • Packages: 1
  • Downloads: 914
https://github.com/tqdm/tqdm

tqdm: A Fast, Extensible Progress Meter for Python and CLI - Published in JOSS (2019)
cli closember console discord gui jupyter keras meter pandas parallel progress progress-bar progressbar progressmeter python rate telegram terminal time utilities
Added: 2 months ago - Last Synced: 2 months ago - Created: June 03, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1726
  • Committers: 117
  • Issues: 235
  • Pull Requests: 226
  • Owner: tqdm
  • Stars: 30563
  • Forks: 1401
  • Packages: 4
  • Downloads: 106,596
https://github.com/pyvista/pyvista

PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)
3d fem finite-element-analysis finite-elements hacktoberfest mesh mesh-processing meshviewer open-science plotting python scientific-research scientific-visualization visualization vtk
Added: 2 months ago - Last Synced: 2 months ago - Created: May 31, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5362
  • Committers: 187
  • Issues: 752
  • Pull Requests: 3680
  • Owner: pyvista
  • Stars: 3328
  • Forks: 595
  • Packages: 4
  • Downloads: 881,583
https://github.com/opengeovis/pvgeo

PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
3d data-visualization geophysics geosciences model-building open-science paraview paraview-plugin python visual-data-integration visualization vtk
Added: 2 months ago - Last Synced: 2 months ago - Created: July 18, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1730
  • Committers: 7
  • Issues: 46
  • Pull Requests: 64
  • Owner: OpenGeoVis
  • Stars: 227
  • Forks: 43
  • Packages: 3
  • Downloads: 2,414
https://github.com/emsig/emg3d

emg3d: A multigrid solver for 3D electromagnetic diffusion - Published in JOSS (2019)
csem electromagnetic geophysics modelling multigrid python
Added: 2 months ago - Last Synced: 2 months ago - Created: April 17, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 346
  • Committers: 2
  • Issues: 31
  • Pull Requests: 112
  • Owner: emsig
  • Stars: 70
  • Forks: 8
  • Packages: 2
  • Downloads: 496
https://github.com/earthlab/earthpy

EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools. - Published in JOSS (2019)
education python raster spatial-data vector
Added: 2 months ago - Last Synced: 2 months ago - Created: February 20, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 947
  • Committers: 38
  • Issues: 11
  • Pull Requests: 176
  • Owner: earthlab
  • Stars: 529
  • Forks: 162
  • Packages: 3
  • Downloads: 17,184
https://github.com/paudetseis/telewavesim

Telewavesim: Python software for teleseismic body wave modeling - Published in JOSS (2019)
anisotropy fortran geophysics modeling obs plane-waves python receiver-functions seismology sks
Added: 2 months ago - Last Synced: 2 months ago - Created: August 26, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 236
  • Committers: 3
  • Issues: 25
  • Pull Requests: 27
  • Owner: paudetseis
  • Stars: 78
  • Forks: 19
  • Packages: 1
  • Downloads: 58
https://github.com/ytree-project/ytree

ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
analysis astronomy astrophysics data merger-trees python simulations trees
Added: 2 months ago - Last Synced: 2 months ago - Created: July 27, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1448
  • Committers: 6
  • Issues: 24
  • Pull Requests: 127
  • Owner: ytree-project
  • Stars: 16
  • Forks: 10
  • Packages: 2
  • Downloads: 368
https://github.com/larq/larq

Larq: An Open-Source Library for Training Binarized Neural Networks - Published in JOSS (2020)
binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow
Added: 2 months ago - Last Synced: 2 months ago - Created: March 18, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 735
  • Committers: 18
  • Issues: 46
  • Pull Requests: 180
  • Owner: larq
  • Stars: 718
  • Forks: 85
  • Packages: 1
  • Downloads: 2,574
https://github.com/underworldcode/underworld2

Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud - Published in JOSS (2020)
auscope docker finite-element-methods geodynamics hacktoberfest hacktoberfest2020 hacktoberfest2021 particle-in-cell petsc python underworld
Added: 2 months ago - Last Synced: 2 months ago - Created: September 28, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C
  • Commits: 1967
  • Committers: 34
  • Issues: 135
  • Pull Requests: 53
  • Owner: underworldcode
  • Stars: 197
  • Forks: 64
  • Packages: 2
  • Downloads: 152
https://github.com/babinyurii/recan

Recan: Python tool for analysis of recombination events in viral genomes - Published in JOSS (2020)
alignment bioinformatics distance-plots dna-recombination genetic-distances python recombination-events virology
Added: 2 months ago - Last Synced: 2 months ago - Created: May 30, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 285
  • Committers: 3
  • Issues: 15
  • Pull Requests: 5
  • Owner: babinyurii
  • Stars: 10
  • Forks: 7
  • Packages: 1
  • Downloads: 36
https://github.com/samuelduchesne/archetypal

archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)
archetypes buildings energy-simulation energyplus energyplus-models python simulation-templates umi umi-template visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: October 17, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2626
  • Committers: 7
  • Issues: 14
  • Pull Requests: 168
  • Owner: samuelduchesne
  • Stars: 17
  • Forks: 9
  • Packages: 1
  • Downloads: 1,866
https://github.com/sap218/jabberwocky

Jabberwocky: an ontology-aware toolkit for manipulating text - Published in JOSS (2020)
annotation grep jabberwocky ontology plotting python synonyms text-mining textual-data tfidf
Added: 2 months ago - Last Synced: 2 months ago - Created: December 12, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 123
  • Committers: 3
  • Issues: 13
  • Pull Requests: 7
  • Owner: sap218
  • Stars: 16
  • Forks: 1
  • Packages: 1
https://github.com/gee-community/geemap

geemap: A Python package for interactive mapping with Google Earth Engine - Published in JOSS (2020)
colab data-science dataviz earth-engine earthengine folium geospatial gis google-earth-engine image-processing ipyleaflet ipywidgets jupyter jupyter-notebook landsat mapping python remote-sensing streamlit streamlit-webapp
Added: 2 months ago - Last Synced: 2 months ago - Created: March 08, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1675
  • Committers: 61
  • Issues: 245
  • Pull Requests: 544
  • Owner: gee-community
  • Stars: 3768
  • Forks: 1124
  • Packages: 4
  • Downloads: 69,328
https://github.com/csdms/bmi

The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences - Published in JOSS (2020)
bmi c csdms cxx fortran geosciences interface java javascript julia numerical-modeling python
Added: 2 months ago - Last Synced: 2 months ago - Created: June 05, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: TeX
  • Commits: 343
  • Committers: 14
  • Issues: 52
  • Pull Requests: 123
  • Owner: csdms
  • Stars: 54
  • Forks: 18
  • Packages: 0
https://github.com/brainglobe/brainglobe-atlasapi

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)
atlases brain microscopy neuroscience python registration visualisation
Added: 2 months ago - Last Synced: 2 months ago - Created: April 30, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 408
  • Committers: 36
  • Issues: 239
  • Pull Requests: 264
  • Owner: brainglobe
  • Stars: 164
  • Forks: 49
  • Packages: 1
  • Downloads: 6,909
https://github.com/scikit-hep/pyhf

pyhf: pure-Python implementation of HistFactory statistical models - Published in JOSS (2021)
asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python scientific-computations scikit-hep scipy statistical-inference statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 24, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1451
  • Committers: 36
  • Issues: 124
  • Pull Requests: 492
  • Owner: scikit-hep
  • Stars: 291
  • Forks: 90
  • Packages: 2
  • Downloads: 1,253,052
https://github.com/learningsimulator/learningsimulator

Learning Simulator: A simulation software for animal and human learning - Published in JOSS (2021)
associative-learning behavior gui mathematical-modelling python reinforcement-learning simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: November 25, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 313
  • Committers: 3
  • Issues: 76
  • Pull Requests: 25
https://github.com/ghislainv/forestatrisk

forestatrisk: a Python package for modelling and forecasting deforestation in the tropics - Published in JOSS (2021)
biodiversity-scenario co2-emissions deforestation deforestation-risk forecasting forest-cover-change ipbes ipcc land-use-change protected-areas python redd roads spatial-analysis spatial-autocorrelation spatial-modelling tropical-forests
Added: 2 months ago - Last Synced: 2 months ago - Created: December 01, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 688
  • Committers: 7
  • Issues: 38
  • Pull Requests: 53
  • Owner: ghislainv
  • Stars: 129
  • Forks: 30
  • Packages: 2
  • Downloads: 950
https://github.com/opengeos/lidar

lidar: A Python package for delineating nested surface depressions from digital elevation data - Published in JOSS (2021)
digital-elevation-model gis hydrological image-processing lidar python remote-sensing terrain-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: May 14, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 206
  • Committers: 6
  • Issues: 24
  • Pull Requests: 49
  • Owner: opengeos
  • Stars: 291
  • Forks: 54
  • Packages: 1
  • Downloads: 1,184
https://github.com/jofmi/agentpy

AgentPy: A package for agent-based modeling in Python - Published in JOSS (2021)
abm agent-based-modeling agent-based-simulation agentpy complex-systems networks networkx python salib
Added: 2 months ago - Last Synced: 2 months ago - Created: June 19, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 312
  • Committers: 6
  • Issues: 43
  • Pull Requests: 27
  • Owner: jofmi
  • Stars: 358
  • Forks: 41
  • Packages: 0
https://github.com/datalad/datalad

DataLad: distributed system for joint management of code, data, and their relationship - Published in JOSS (2021)
closember data-storage dataset git-annex python usable
Added: 2 months ago - Last Synced: 2 months ago - Created: November 01, 2013

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 13447
  • Committers: 61
  • Issues: 302
  • Pull Requests: 378
  • Owner: datalad
  • Stars: 612
  • Forks: 115
  • Packages: 2
  • Downloads: 32,880
https://github.com/andr1976/hyddown

HydDown: A Python package for calculation of hydrogen (or other gas) pressure vessel filling and discharge - Published in JOSS (2021)
blow-down coolprop depressurisation gas-phase heat-transfer pressure python relief-valve thermodynamics
Added: 2 months ago - Last Synced: 2 months ago - Created: March 30, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 601
  • Committers: 4
  • Issues: 17
  • Pull Requests: 84
  • Owner: andr1976
  • Stars: 36
  • Forks: 8
  • Packages: 1
  • Downloads: 60
https://github.com/kineticstoolkit/kineticstoolkit

Kinetics Toolkit: An Open-Source Python Package to Facilitate Research in Biomechanics - Published in JOSS (2021)
api biomechanics kinematics kinetics python toolbox
Added: 2 months ago - Last Synced: 2 months ago - Created: May 28, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 618
  • Committers: 5
  • Issues: 81
  • Pull Requests: 7
https://github.com/swe-unistuttgart/qlunc

Qlunc: Quantification of lidar uncertainty - Published in JOSS (2021)
jupyterlab openlidar python uncertainty wind-lidar
Added: 2 months ago - Last Synced: 2 months ago - Created: May 04, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 2068
  • Committers: 6
  • Issues: 13
  • Pull Requests: 96
https://github.com/galsci/pysm

The Python Sky Model 3 software - Published in JOSS (2021)
cosmic-microwave-background cosmology healpix healpy mpi python
Added: 2 months ago - Last Synced: 2 months ago - Created: December 12, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1164
  • Committers: 14
  • Issues: 83
  • Pull Requests: 108
  • Owner: galsci
  • Stars: 39
  • Forks: 30
  • Packages: 1
  • Downloads: 3,685
https://github.com/devsim/devsim

DEVSIM: A TCAD Semiconductor Device Simulator - Published in JOSS (2022)
c-plus-plus devsim finite-volume pde python semiconductor semiconductor-physics tcad tcad-device-simulator
Added: 2 months ago - Last Synced: 2 months ago - Created: March 17, 2013

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 803
  • Committers: 10
  • Issues: 129
  • Pull Requests: 30
  • Owner: devsim
  • Stars: 226
  • Forks: 72
  • Packages: 1
  • Downloads: 9,982
https://github.com/ni1o1/transbigdata

TransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualization - Published in JOSS (2022)
bike-sharing-data bus-gps-data data-analysis data-pre-processing data-quality-analysis data-visualization geospatial-data python spatio-temporal-data taxi-gps-data transportation
Added: 2 months ago - Last Synced: 2 months ago - Created: October 21, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 613
  • Committers: 9
  • Issues: 52
  • Pull Requests: 48
  • Owner: ni1o1
  • Stars: 522
  • Forks: 118
  • Packages: 2
  • Downloads: 2,040
https://github.com/csdms/babelizer

The Babelizer: language interoperability for model coupling in the geosciences - Published in JOSS (2022)
bmi c csdms cxx fortran hacktoberfest pymt python
Added: 2 months ago - Last Synced: 2 months ago - Created: April 05, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 274
  • Committers: 3
  • Issues: 32
  • Pull Requests: 96
  • Owner: csdms
  • Stars: 5
  • Forks: 3
  • Packages: 1
https://github.com/althonos/pyrodigal

Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes - Published in JOSS (2022)
bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd
Added: 2 months ago - Last Synced: 2 months ago - Created: April 26, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Cython
  • Commits: 853
  • Committers: 5
  • Issues: 59
  • Pull Requests: 11
  • Owner: althonos
  • Stars: 171
  • Forks: 10
  • Packages: 2
  • Downloads: 26,922
https://github.com/cgre-aachen/gemgis

GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)
geographic geographic-data geomodeling geospatial jupyter jupyter-notebook modeling notebooks processing python raster-data spatial-data vector-data visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: April 25, 2020

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  • Main Language: Python
  • Commits: 1136
  • Committers: 16
  • Issues: 125
  • Pull Requests: 51
  • Owner: cgre-aachen
  • Stars: 279
  • Forks: 43
  • Packages: 3
  • Downloads: 1,218
https://github.com/pysal/spopt

spopt: a python package for solving spatial optimization problems in PySAL - Published in JOSS (2022)
facility-location location-allocation location-modeling python regionalization resource-planning routing spatial-analysis spatial-optimization transportation
Added: 2 months ago - Last Synced: 2 months ago - Created: March 01, 2019

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  • Main Language: Python
  • Commits: 871
  • Committers: 23
  • Issues: 113
  • Pull Requests: 130
  • Owner: pysal
  • Stars: 344
  • Forks: 55
  • Packages: 3
  • Downloads: 39,371
https://github.com/ronshnapp/myptv

MyPTV: A Python Package for 3D Particle Tracking - Published in JOSS (2022)
3d-ptv experiments fluid-mechanics measurements particle-tracking photogrammetry python turbulence
Added: 2 months ago - Last Synced: 2 months ago - Created: March 21, 2022

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  • Open source license? true
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  • Main Language: Python
  • Commits: 318
  • Committers: 3
  • Issues: 35
  • Pull Requests: 6
  • Owner: ronshnapp
  • Stars: 62
  • Forks: 20
  • Packages: 0
https://github.com/open-atmos/PyMPDATA

PyMPDATA v1: Numba-accelerated implementation of MPDATA with examples in Python, Julia and Matlab - Published in JOSS (2022)
advection advection-diffusion atmospheric-modelling numba numerical-integration pde-solver pypi-package python research simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: December 03, 2019

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  • Main Language: Python
  • Commits: 1114
  • Committers: 18
  • Issues: 80
  • Pull Requests: 384
  • Owner: open-atmos
  • Stars: 30
  • Forks: 22
  • Packages: 2
  • Downloads: 2,988
https://github.com/beuth-erdelt/dbms-benchmarker

DBMS-Benchmarker: Benchmark and Evaluate DBMS in Python - Published in JOSS (2022)
agplv3 benchmarking dbms jdbc python sql
Added: 2 months ago - Last Synced: 2 months ago - Created: October 06, 2019

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  • Main Language: HTML
  • Commits: 515
  • Committers: 5
  • Issues: 67
  • Pull Requests: 147
  • Owner: Beuth-Erdelt
  • Stars: 14
  • Forks: 3
  • Packages: 1
  • Downloads: 223
https://github.com/chmarti1/pyromat

PYroMat: A Python package for thermodynamic properties - Published in JOSS (2022)
python thermodynamic-properties thermodynamics
Added: 2 months ago - Last Synced: 2 months ago - Created: October 14, 2016

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 253
  • Committers: 3
  • Issues: 75
  • Pull Requests: 25
  • Owner: chmarti1
  • Stars: 82
  • Forks: 12
  • Packages: 0
https://github.com/ggonnella/fastsubtrees

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy - Published in JOSS (2022)
bioinformatics ncbi-taxonomy python subtree subtree-extraction subtree-query taxonomy tree
Added: 2 months ago - Last Synced: 2 months ago - Created: November 26, 2021

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  • Main Language: Python
  • Commits: 482
  • Committers: 4
  • Issues: 25
  • Pull Requests: 2
  • Owner: ggonnella
  • Stars: 4
  • Forks: 0
  • Packages: 5
  • Downloads: 132
https://github.com/vyrjana/deareis

DearEIS - A GUI program for analyzing impedance spectra - Published in JOSS (2022)
electrochemistry impedance impedance-spectroscopy python
Added: 2 months ago - Last Synced: 2 months ago - Created: March 23, 2022

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  • Main Language: Python
  • Commits: 105
  • Committers: 1
  • Issues: 24
  • Pull Requests: 1
  • Owner: vyrjana
  • Stars: 87
  • Forks: 11
  • Packages: 1
  • Downloads: 412
https://github.com/siavashk/pycpd

PyCPD: Pure NumPy Implementation of the Coherent Point Drift Algorithm - Published in JOSS (2022)
expectation-maximization point-cloud python registration
Added: 2 months ago - Last Synced: 2 months ago - Created: October 23, 2016

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  • Main Language: Python
  • Commits: 165
  • Committers: 17
  • Issues: 56
  • Pull Requests: 41
  • Owner: siavashk
  • Stars: 576
  • Forks: 124
  • Packages: 1
  • Downloads: 7,975
https://github.com/gnudatalanguage/gdl

GNU Data Language 1.0: a free/libre and open-source drop-in replacement for IDL/PV-WAVE - Published in JOSS (2022)
antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: April 04, 2018

  • Relevant topics? true
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  • Main Language: C++
  • Commits: 6789
  • Committers: 53
  • Issues: 365
  • Pull Requests: 346
https://github.com/ianfhunter/gnoll

GNOLL: Efficient Multi-Lingual Software for Real-World Dice Notation and Extensions - Published in JOSS (2023)
board-game c cpp dice dice-notation dice-roller dice-rolls go golang haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg
Added: 2 months ago - Last Synced: 2 months ago - Created: May 02, 2019

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  • Main Language: Yacc
  • Commits: 1768
  • Committers: 19
  • Issues: 63
  • Pull Requests: 124
  • Owner: ianfhunter
  • Stars: 48
  • Forks: 24
  • Packages: 4
  • Downloads: 222
https://github.com/onroerenderfgoed/atramhasis

Atramhasis: An online SKOS vocabulary editor - Published in JOSS (2023)
app pypi-package python skos thesaurus vocabulary
Added: 2 months ago - Last Synced: 2 months ago - Created: April 08, 2014

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  • Main Language: Python
  • Commits: 1722
  • Committers: 27
  • Issues: 97
  • Pull Requests: 8
https://github.com/vocalpy/crowsetta

Crowsetta: A Python tool to work with any format for annotating animal vocalizations and bioacoustics data. - Published in JOSS (2023)
animal-communication animal-vocalizations annotation annotation-format bioacoustic-analysis bioacoustics birdsong csv dataset python python3
Added: 2 months ago - Last Synced: 2 months ago - Created: December 01, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 894
  • Committers: 3
  • Issues: 90
  • Pull Requests: 63
  • Owner: vocalpy
  • Stars: 58
  • Forks: 4
  • Packages: 2
  • Downloads: 1,082
https://github.com/prashjet/popkinmocks

popkinmocks: mock IFU datacubes for modelling stellar populations and kinematics - Published in JOSS (2023)
astronomy astrophysics datacube galaxy python spectroscopy stellar-kinematics stellar-populations
Added: 2 months ago - Last Synced: 2 months ago - Created: September 27, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 86
  • Committers: 3
  • Issues: 34
  • Pull Requests: 54
  • Owner: prashjet
  • Stars: 5
  • Forks: 1
  • Packages: 0
https://github.com/nialov/fractopo

fractopo: A Python package for fracture network analysis - Published in JOSS (2023)
analysis fractopo fracture geology geometry python spatial-analysis topology
Added: 2 months ago - Last Synced: 2 months ago - Created: September 21, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 1525
  • Committers: 4
  • Issues: 18
  • Pull Requests: 171
  • Owner: nialov
  • Stars: 26
  • Forks: 7
  • Packages: 2
  • Downloads: 117
https://github.com/edyvision/pii-codex

PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
analysis data-analysis personal-identifiable-information pii pii-detection poetry presidio python python3 research research-software research-tool
Added: 2 months ago - Last Synced: 2 months ago - Created: September 07, 2022

  • Relevant topics? false
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  • Open source license? true
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  • Main Language: Python
  • Commits: 49
  • Committers: 1
  • Issues: 6
  • Pull Requests: 34
  • Owner: EdyVision
  • Stars: 94
  • Forks: 11
  • Packages: 1
  • Downloads: 98
https://github.com/pyplati/platipy

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)
image-analysis medical-imaging python registration segmentation visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: September 22, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 744
  • Committers: 12
  • Issues: 48
  • Pull Requests: 72
  • Owner: pyplati
  • Stars: 137
  • Forks: 29
  • Packages: 1
  • Downloads: 2,730
https://github.com/pyamg/pyamg

PyAMG: Algebraic Multigrid Solvers in Python - Published in JOSS (2023)
amg conda krylov multigrid pyamg python solver sparse-matrix
Added: 2 months ago - Last Synced: 2 months ago - Created: June 22, 2013

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 2283
  • Committers: 35
  • Issues: 74
  • Pull Requests: 117
  • Owner: pyamg
  • Stars: 626
  • Forks: 119
  • Packages: 5
  • Downloads: 94,298
https://github.com/taxprofiler/taxpasta

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation - Published in JOSS (2023)
bioinformatics classification metagenomic-classification metagenomics profiling python standardisation taxonomic-classifications taxonomic-profiling
Added: 2 months ago - Last Synced: 2 months ago - Created: June 03, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 618
  • Committers: 5
  • Issues: 69
  • Pull Requests: 85
  • Owner: taxprofiler
  • Stars: 41
  • Forks: 7
  • Packages: 1
  • Downloads: 56
https://github.com/paulbrodersen/netgraph

Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
graph graph-tool igraph matplotlib network network-analysis network-science networkx publication-quality-plots python visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: October 04, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 747
  • Committers: 10
  • Issues: 89
  • Pull Requests: 14
  • Owner: paulbrodersen
  • Stars: 733
  • Forks: 44
  • Packages: 1
  • Downloads: 9,030
https://github.com/ethicsai/ethical-smart-grid

Ethical Smart Grid: a Gym environment for learning ethical behaviours - Published in JOSS (2023)
ai-ethics artificial-intelligence gym-environment machine-ethics python reinforcement-learning smart-grid
Added: 2 months ago - Last Synced: 2 months ago - Created: September 13, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 188
  • Committers: 3
  • Issues: 3
  • Pull Requests: 7
  • Owner: ethicsai
  • Stars: 2
  • Forks: 0
  • Packages: 1
  • Downloads: 20
https://github.com/mrsonandrade/pyswarming

PySwarming: a research toolkit for Swarm Robotics - Published in JOSS (2023)
bioinspired engineering math mathematics multi-robot-systems pypi python python-toolkit research robot robotics self-organizing swarm swarm-intelligence swarm-robotics
Added: 2 months ago - Last Synced: 2 months ago - Created: September 09, 2022

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 58
  • Committers: 2
  • Issues: 10
  • Pull Requests: 1
  • Owner: mrsonandrade
  • Stars: 29
  • Forks: 5
  • Packages: 1
  • Downloads: 37
https://github.com/tenemark/mikecalsetup

mikecalsetup: an open-source python tool for automatically creating calibration setups of MIKE SHE models in PEST or OSTRICH - Published in JOSS (2023)
calibration mikeshe ostrich pest python
Added: 2 months ago - Last Synced: 2 months ago - Created: November 01, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 54
  • Committers: 2
  • Issues: 10
  • Pull Requests: 4
  • Owner: tenemark
  • Stars: 3
  • Forks: 0
  • Packages: 0
https://github.com/damar-wicaksono/uqtestfuns

UQTestFuns: A Python3 library of uncertainty quantification (UQ) test functions - Published in JOSS (2023)
metamodeling python reliability-analysis sensitivity-analysis test-functions uncertainty-quantification
Added: 2 months ago - Last Synced: 2 months ago - Created: March 24, 2022

  • Relevant topics? false
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 377
  • Committers: 3
  • Issues: 182
  • Pull Requests: 153
https://github.com/akikuno/cstag

cstag and cstag-cli: tools for manipulating and visualizing cs tags - Published in JOSS (2024)
bioinformatics cstag minimap2 python sam sequence
Added: 2 months ago - Last Synced: 2 months ago - Created: March 12, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 248
  • Committers: 2
  • Issues: 12
  • Pull Requests: 16
  • Owner: akikuno
  • Stars: 10
  • Forks: 0
  • Packages: 1
  • Downloads: 1,379
https://github.com/alejandrojuria/tightbinder

tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids - Published in JOSS (2024)
alloys band-structure condensed-matter-physics dft-fit disorder electronic-structure physics python simulation slater-koster solid-state-physics tight-binding topology
Added: 2 months ago - Last Synced: 2 months ago - Created: May 26, 2020

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 401
  • Committers: 4
  • Issues: 8
  • Pull Requests: 6
https://github.com/utel-uiuc/gtfs_segments

GTFS Segments: A Fast and Efficient Library to Generate Bus Stop Spacings - Published in JOSS (2024)
bus distribution gtfs-feed python stop transit transit-data
Added: 2 months ago - Last Synced: 2 months ago - Created: June 06, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 204
  • Committers: 3
  • Issues: 6
  • Pull Requests: 17
  • Owner: UTEL-UIUC
  • Stars: 46
  • Forks: 3
  • Packages: 3
  • Downloads: 597
https://github.com/mreye-lumc/zospy

ZOSPy: optical ray tracing in Python through OpticStudio - Published in JOSS (2024)
optics optics-simulation opticstudio python zemax zos-api
Added: 2 months ago - Last Synced: 2 months ago - Created: September 06, 2021

  • Relevant topics? false
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  • Open source license? true
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  • Main Language: Python
  • Commits: 248
  • Committers: 9
  • Issues: 21
  • Pull Requests: 201
  • Owner: MREYE-LUMC
  • Stars: 77
  • Forks: 17
  • Packages: 1
  • Downloads: 520
https://github.com/toloka/crowd-kit

Learning from Crowds with Crowd-Kit - Published in JOSS (2024)
aggregations annotation crowd crowdsourcing data-mining data-science labeling python quality-control toloka truth-inference
Added: 2 months ago - Last Synced: 2 months ago - Created: March 01, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 376
  • Committers: 28
  • Issues: 26
  • Pull Requests: 127
  • Owner: Toloka
  • Stars: 233
  • Forks: 19
  • Packages: 1
  • Downloads: 5,565
https://github.com/cement-psaap/mcdc

Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development - Published in JOSS (2024)
high-performance-computing monte-carlo-simulation neutron-transport neutronics nuclear-engineering parallel particle-transport python radiation-transport simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: February 25, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1027
  • Committers: 28
  • Issues: 92
  • Pull Requests: 192
  • Owner: CEMeNT-PSAAP
  • Stars: 45
  • Forks: 27
  • Packages: 1
  • Downloads: 48
https://github.com/cosmoglobe/zodipy

ZodiPy: A Python package for zodiacal light simulations - Published in JOSS (2024)
astronomy astropy-affiliated infrared-astronomy interplanetary-dust python simulation-physics simulations zodiacal-light
Added: 2 months ago - Last Synced: 2 months ago - Created: August 11, 2021

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 486
  • Committers: 6
  • Issues: 29
  • Pull Requests: 37
  • Owner: Cosmoglobe
  • Stars: 12
  • Forks: 10
  • Packages: 2
  • Downloads: 209
https://github.com/soundata/soundata

Soundata: Reproducible use of audio datasets - Published in JOSS (2024)
audio bioacoustics dataset environmental-sound python urban-sound
Added: 2 months ago - Last Synced: 2 months ago - Created: March 02, 2021

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 829
  • Committers: 30
  • Issues: 78
  • Pull Requests: 174
  • Owner: soundata
  • Stars: 345
  • Forks: 27
  • Packages: 1
  • Downloads: 3,094
https://github.com/ericfell/rfbzero

RFBzero: A Python package for zero-dimensional simulation of redox flow battery cycling - Published in JOSS (2024)
batteries battery-models microkinetics python rfbzero simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: July 17, 2023

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 278
  • Committers: 2
  • Issues: 6
  • Pull Requests: 40
  • Owner: ericfell
  • Stars: 8
  • Forks: 2
  • Packages: 1
  • Downloads: 28
https://github.com/sourmash-bio/sourmash

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets - Published in JOSS (2024)
bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling
Added: 2 months ago - Last Synced: 2 months ago - Created: April 09, 2016

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 2136
  • Committers: 47
  • Issues: 607
  • Pull Requests: 1251
  • Owner: sourmash-bio
  • Stars: 524
  • Forks: 88
  • Packages: 4
  • Downloads: 56,689
https://github.com/cm2s/piglot

piglot: an Open-source Package for Derivative-free Optimisation of Numerical Responses - Published in JOSS (2024)
bayesian-optimization optimisation parameter-identification physics-solvers python
Added: 2 months ago - Last Synced: 2 months ago - Created: March 15, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 55
  • Committers: 5
  • Issues: 4
  • Pull Requests: 82
  • Owner: CM2S
  • Stars: 19
  • Forks: 4
  • Packages: 1
  • Downloads: 56
https://github.com/mnets/pymnet

pymnet: A Python Library for Multilayer Networks - Published in JOSS (2024)
multilayer-networks network-analysis python
Added: 2 months ago - Last Synced: 2 months ago - Created: June 29, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 574
  • Committers: 10
  • Issues: 43
  • Pull Requests: 10
  • Owner: mnets
  • Stars: 152
  • Forks: 26
  • Packages: 1
  • Downloads: 931
https://github.com/paucablop/chemotools

chemotools: A Python Package that Integrates Chemometrics and scikit-learn - Published in JOSS (2024)
artificial-intelligence autoencoders chemometrics deep-learning hacktoberfest ir-spectroscopy machine-learning multivariate-analysis nir-spectroscopy python raman-spectroscopy scikit-learn sklearn spectra spectroscopy
Added: 2 months ago - Last Synced: 2 months ago - Created: January 26, 2023

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  • Main Language: Python
  • Commits: 517
  • Committers: 3
  • Issues: 57
  • Pull Requests: 212
  • Owner: paucablop
  • Stars: 63
  • Forks: 10
  • Packages: 1
  • Downloads: 1,895
https://github.com/cosima/regional-mom6

regional-mom6: A Python package for automatic generation of regional configurations for the Modular Ocean Model 6 - Published in JOSS (2024)
mom6 ocean-modelling python regional-model
Added: 2 months ago - Last Synced: 2 months ago - Created: August 15, 2022

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  • Main Language: Python
  • Commits: 448
  • Committers: 8
  • Issues: 84
  • Pull Requests: 217
  • Owner: COSIMA
  • Stars: 29
  • Forks: 19
  • Packages: 1
  • Downloads: 150
https://github.com/rwth-ebc/filip

FiLiP: A python software development kit (SDK) for accelerating the development of services based on FIWARE IoT platform - Published in JOSS (2024)
fiware fiware-iot-agents fiware-ngsi-v2 fiware-orion fiware-quantum-leap hacktoberfest iot maintained python tool
Added: 2 months ago - Last Synced: 2 months ago - Created: May 26, 2019

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  • Fork? false
  • Main Language: Python
  • Commits: 2239
  • Committers: 42
  • Issues: 190
  • Pull Requests: 272
  • Owner: RWTH-EBC
  • Stars: 24
  • Forks: 15
  • Packages: 1
  • Downloads: 1,486
https://github.com/ekiefl/pooltool

Pooltool: A Python package for realistic billiards simulation - Published in JOSS (2024)
billiards eight-ball panda3d physics pool python simulation snooker
Added: 2 months ago - Last Synced: 2 months ago - Created: April 09, 2020

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1863
  • Committers: 10
  • Issues: 54
  • Pull Requests: 249
  • Owner: ekiefl
  • Stars: 297
  • Forks: 54
  • Packages: 1
  • Downloads: 2,171
https://github.com/ks905383/xagg

xagg: A Python package to aggregate gridded data onto polygons - Published in JOSS (2024)
aggregation polygon python raster-data xarray
Added: 2 months ago - Last Synced: 2 months ago - Created: May 14, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 217
  • Committers: 6
  • Issues: 38
  • Pull Requests: 72
  • Owner: ks905383
  • Stars: 100
  • Forks: 15
  • Packages: 3
  • Downloads: 1,060
https://github.com/gadomski/antimeridian

antimeridian: A Python package for correcting geometries that cross the 180th meridian - Published in JOSS (2025)
antimeridian geojson geospatial python
Added: 2 months ago - Last Synced: 2 months ago - Created: April 11, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 245
  • Committers: 3
  • Issues: 39
  • Pull Requests: 179
  • Owner: gadomski
  • Stars: 89
  • Forks: 7
  • Packages: 2
  • Downloads: 40,464
https://github.com/cambridge-iccs/ftorch

FTorch: a library for coupling PyTorch models to Fortran - Published in JOSS (2025)
deep-learning fortran hacktoberfest interoperability libtorch machine-learning python pytorch torch
Added: 2 months ago - Last Synced: 2 months ago - Created: October 14, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Fortran
  • Commits: 408
  • Committers: 17
  • Issues: 166
  • Pull Requests: 303
https://github.com/madupite/madupite

madupite: A High-Performance Distributed Solver for Large-Scale Markov Decision Processes - Published in JOSS (2025)
cpp dynamic-programming ethz high-performance-computing markov-decision-processes mdp mdpsolver mpi nanobind optimal-control optimization petsc policy-iteration python python3 solver stochastic-optimal-control stochastic-optimization
Added: 2 months ago - Last Synced: 2 months ago - Created: August 22, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 503
  • Committers: 8
  • Issues: 0
  • Pull Requests: 8
  • Owner: madupite
  • Stars: 26
  • Forks: 1
  • Packages: 0
https://github.com/milanofthe/pathsim

PathSim - A System Simulation Framework - Published in JOSS (2025)
automatic-differentiation blockdiagram control-systems differentiable-simulations framework hierarchical-modeling nonlinear-dynamics python simulation simulation-framework system-simulation transient-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: July 12, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 778
  • Committers: 9
  • Issues: 23
  • Pull Requests: 51
  • Owner: milanofthe
  • Stars: 179
  • Forks: 14
  • Packages: 1
  • Downloads: 1,308
https://github.com/hzacode/cheminformant

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access - Published in JOSS (2025)
api-client batch-processing caching cas cheminformatics chemistry cli compound-search data-validation dataframe drug-discovery iupac molecular-descriptors molecular-weight pandas pubchem python rest-api smiles sql
Added: 2 months ago - Last Synced: 2 months ago - Created: January 21, 2024

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 375
  • Committers: 3
  • Issues: 13
  • Pull Requests: 45
  • Owner: HzaCode
  • Stars: 4
  • Forks: 1
  • Packages: 1
  • Downloads: 446
https://github.com/emsl-computing/pore2chip

Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design - Published in JOSS (2025)
data-analysis data-visualization experimental-design flow lab lab-on-chip machine-learning microfluidics-chip-enrichment model-data-fusion neural-networks openpnm pore-network porous-materials porous-media python reactive-transport scientific-visualization soil terraforms xct
Added: 2 months ago - Last Synced: 2 months ago - Created: July 03, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 115
  • Committers: 5
  • Issues: 8
  • Pull Requests: 12
https://github.com/otvam/pypeec

PyPEEC: A 3D Quasi-Magnetostatic Solver using an FFT-Accelerated PEEC Method with Voxelization - Published in JOSS (2025)
3d conductor electric fft field-simulation frequency-domain magnetic maxwell-equations open-source-software peec power-electronics pypeec python voxel
Added: 2 months ago - Last Synced: 2 months ago - Created: December 29, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1784
  • Committers: 1
  • Issues: 12
  • Pull Requests: 0
  • Owner: otvam
  • Stars: 38
  • Forks: 4
  • Packages: 1
  • Downloads: 413
https://github.com/bluespacepotato/hsi-wizard

hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications - Published in JOSS (2025)
hsi hyperspectral hyperspectral-imaging python python3
Added: 2 months ago - Last Synced: 2 months ago - Created: July 14, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 195
  • Committers: 2
  • Issues: 20
  • Pull Requests: 31
https://github.com/cthoyt/chembl-downloader

Improving reproducibility of cheminformatics workflows with chembl-downloader - Published in JOSS (2025)
bioinformatics chembl cheminformatics chemogenomics chemometrics machine-learning pharmacology proteochemometrics python reproducible-research toxicology
Added: 2 months ago - Last Synced: 2 months ago - Created: July 27, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 159
  • Committers: 4
  • Issues: 7
  • Pull Requests: 27
  • Owner: cthoyt
  • Stars: 80
  • Forks: 15
  • Packages: 2
  • Downloads: 9,064
https://github.com/cjtu/craterpy

Craterpy: Impact crater data science in Python - Published in JOSS (2025)
data-science open-science planetary python
Added: 2 months ago - Last Synced: 2 months ago - Created: April 17, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 350
  • Committers: 8
  • Issues: 35
  • Pull Requests: 90
  • Owner: cjtu
  • Stars: 20
  • Forks: 9
  • Packages: 1
  • Downloads: 433
https://github.com/doi-usgs/pywatershed

A sustainable integrated, hydrologic modeling framework for the U.S. Geological Survey.
hydrology modflow modflow6 prms python surfacehydrology swb water
Added: 4 months ago - Last Synced: 3 days ago - Created: January 20, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Fortran
  • Commits: 1528
  • Committers: 10
  • Issues: 3
  • Pull Requests: 9
  • Owner: DOI-USGS
  • Stars: 47
  • Forks: 21
  • Packages: 0
https://github.com/petervanlunteren/addaxai

An open-source application designed to streamline the work of ecologists dealing with camera trap images.
cameratraps conservation ecology machine-learning megadetector object-detection python
Added: 10 months ago - Last Synced: 3 days ago - Created: January 29, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1569
  • Committers: 13
  • Issues: 37
  • Pull Requests: 29
https://github.com/hyriver/hyriver.github.io

A Python software stack for retrieving hydroclimate data from web services.
climate data hydrology python webservice
Added: over 2 years ago - Last Synced: 3 days ago - Created: March 04, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Makefile
  • Commits: 409
  • Committers: 4
  • Issues: 9
  • Pull Requests: 24
  • Owner: hyriver
  • Stars: 109
  • Forks: 13
  • Packages: 0