https://github.com/nl-bioimaging/biomero
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
biaflows
bioimaging
biomero
cytomine
fair
high-content-screening
high-performance-computing
high-throughput-screening
image-analysis
omero
python
slurm
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: May 10, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 164
- Committers: 5
- Issues: 4
- Pull Requests: 3
- Owner: NL-BioImaging
- Stars: 7
- Forks: 0
- Packages: 2
- Downloads: 411
https://github.com/daylily-informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws
bioinformatics
bioinformatics-pipeline
budgeting
ec2
ephemeral
genomic-data-analysis
giab
human-genome
informatics
ngs
parallel-cluster
scalable
scaling
slurm
snakemake
snv-call
wgs
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: April 29, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 313
- Committers: 12
- Issues: 0
- Pull Requests: 17
- Owner: Daylily-Informatics
- Stars: 17
- Forks: 0
- Packages: 0
