https://github.com/BigDataBiology/SemiBin
SemiBin: metagenomics binning with self-supervised deep learning
https://github.com/BigDataBiology/SemiBin
Keywords
assembly-binning bioinformatics deep-learning metagenomics self-supervised-learning
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
SemiBin: metagenomics binning with self-supervised deep learning
- Host: GitHub
- URL: https://github.com/BigDataBiology/SemiBin
- Owner: BigDataBiology
- Created: 2020-11-18T06:23:23.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2024-04-27T15:36:53.000Z (about 1 year ago)
- Last Synced: 2024-06-05T06:20:45.625Z (11 months ago)
- Topics: assembly-binning, bioinformatics, deep-learning, metagenomics, self-supervised-learning
- Language: Python
- Homepage: https://semibin.rtfd.io/
- Size: 70.5 MB
- Stars: 101
- Watchers: 5
- Forks: 11
- Open Issues: 11
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: ChangeLog
- Citation: CITATION.md
Owner metadata
- Name: Big Data Biology Lab
- Login: BigDataBiology
- Email: [email protected]
- Kind: organization
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/38910137?v=4
- Repositories: 15
- Last ynced at: 2023-03-05T21:38:11.520Z
- Profile URL: https://github.com/BigDataBiology
Committers metadata
Last synced: about 2 years ago
Total Commits: 478
Total Committers: 6
Avg Commits per committer: 79.667
Development Distribution Score (DDS): 0.475
| Name | Commits | |
|---|---|---|
| psj1997 | 1****9@q****m | 251 |
| Luis Pedro Coelho | l****s@l****g | 213 |
| SvetlanaUP | 6****P@u****m | 10 |
| Yang Yunyi | y****g@l****k | 2 |
| Florian Plaza Oñate | f****e@i****r | 1 |
| Sebastian Jaenicke | s****k@C****E | 1 |
Committer domains:
- cebitec.uni-bielefeld.de: 1
- inra.fr: 1
- ln.hk: 1
- luispedro.org: 1
- qq.com: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 94
Total pull requests: 37
Average time to close issues: about 1 month
Average time to close pull requests: 3 days
Total issue authors: 58
Total pull request authors: 6
Average comments per issue: 3.63
Average comments per pull request: 0.38
Merged pull request: 31
Bot issues: 0
Bot pull requests: 0
Past year issues: 27
Past year pull requests: 1
Past year average time to close issues: 12 days
Past year average time to close pull requests: N/A
Past year issue authors: 20
Past year pull request authors: 1
Past year average comments per issue: 3.07
Past year average comments per pull request: 5.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- luispedro (11)
- fplaza (7)
- SilasK (5)
- FelipeMSD (4)
- nashanghenzan (2)
- mgabriell1 (2)
- PeterCx (2)
- Ralwoss (2)
- rhysnewell (2)
- joeyclancy (2)
- hildebra (2)
- SvetlanaUP (2)
- eperezv (2)
- zpinocchio (2)
- ZarulHanifah (2)
Top Pull Request Authors
- SvetlanaUP (14)
- luispedro (14)
- psj1997 (6)
- fplaza (1)
- sjaenick (1)
- alienzj (1)
Top Issue Labels
- enhancement (3)
- good first issue (3)
- bad-error-message (2)
- bug (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 107 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 22
- Total maintainers: 1
pypi.org: semibin
Metagenomic binning with siamese neural networks
- Homepage: https://github.com/BigDataBiology/SemiBin
- Documentation: https://semibin.readthedocs.io/
- Licenses: MIT
- Latest release: 2.1.0 (published about 1 year ago)
- Last Synced: 2024-06-05T06:20:13.195Z (11 months ago)
- Versions: 22
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 107 Last month
-
Rankings:
- Stargazers count: 7.897%
- Dependent packages count: 10.069%
- Forks count: 11.412%
- Downloads: 12.545%
- Average: 12.71%
- Dependent repos count: 21.628%
- Maintainers (1)
Dependencies
- mkdocs >=1.3.0
- atomicwrites *
- numexpr *
- numpy *
- pandas *
- python-igraph *
- pyyaml *
- requests *
- scikit-learn *
- torch *
- tqdm *
- actions/checkout v2 composite
- actions/setup-python v2 composite
- conda-incubator/setup-miniconda v2 composite
Score: 11.201606222752293