https://github.com/althonos/pyopal
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
https://github.com/althonos/pyopal
Keywords
bioinformatics cython-library cython-wrapper genomics needleman-wunsch python-bindings python-library sequence-alignment simd smith-waterman
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
- Host: GitHub
- URL: https://github.com/althonos/pyopal
- Owner: althonos
- License: mit
- Created: 2022-10-04T14:09:55.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-06-06T10:22:24.000Z (11 months ago)
- Last Synced: 2024-06-11T18:24:10.712Z (11 months ago)
- Topics: bioinformatics, cython-library, cython-wrapper, genomics, needleman-wunsch, python-bindings, python-library, sequence-alignment, simd, smith-waterman
- Language: Python
- Homepage: https://pyopal.readthedocs.io
- Size: 321 KB
- Stars: 7
- Watchers: 3
- Forks: 1
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: COPYING
Owner metadata
- Name: Martin Larralde
- Login: althonos
- Email:
- Kind: user
- Description: PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.
- Website:
- Location: Heidelberg, Germany
- Twitter: althonos
- Company: EMBL / LUMC, @zellerlab
- Icon url: https://avatars.githubusercontent.com/u/8660647?u=194fbf9846310fda8a9e9d1288993cc967e28ef9&v=4
- Repositories: 91
- Last ynced at: 2024-06-11T15:48:47.831Z
- Profile URL: https://github.com/althonos
GitHub Events
Total
- Create event: 19
- Issues event: 10
- Release event: 16
- Watch event: 6
- Delete event: 2
- Issue comment event: 9
- Public event: 1
- Push event: 124
- Pull request review comment event: 2
- Pull request event: 2
- Fork event: 1
Last Year
- Create event: 16
- Delete event: 2
- Fork event: 1
- Issue comment event: 7
- Issues event: 7
- Pull request event: 2
- Pull request review comment event: 2
- Push event: 97
- Release event: 12
- Watch event: 4
Committers metadata
Last synced: about 2 years ago
Total Commits: 64
Total Committers: 1
Avg Commits per committer: 64.0
Development Distribution Score (DDS): 0.0
| Name | Commits | |
|---|---|---|
| Martin Larralde | m****e@e****e | 64 |
Committer domains:
- embl.de: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 6
Total pull requests: 1
Average time to close issues: 5 days
Average time to close pull requests: 3 days
Total issue authors: 3
Total pull request authors: 1
Average comments per issue: 1.83
Average comments per pull request: 1.0
Merged pull request: 1
Bot issues: 0
Bot pull requests: 0
Past year issues: 4
Past year pull requests: 1
Past year average time to close issues: 6 days
Past year average time to close pull requests: 3 days
Past year issue authors: 3
Past year pull request authors: 1
Past year average comments per issue: 2.0
Past year average comments per pull request: 1.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- valentynbez (4)
- LotusIodid (1)
- RayHackett (1)
Top Pull Request Authors
- valentynbez (1)
Top Issue Labels
- bug (6)
- external (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 3,127 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 17
- Total maintainers: 1
pypi.org: pyopal
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
- Homepage: https://github.com/althonos/pyopal
- Documentation: https://pyopal.readthedocs.io/en/stable/
- Licenses: MIT
- Latest release: 0.6.0 (published about 1 year ago)
- Last Synced: 2024-06-11T19:10:08.507Z (11 months ago)
- Versions: 17
- Dependent Packages: 1
- Dependent Repositories: 1
- Downloads: 3,127 Last month
-
Rankings:
- Dependent packages count: 10.109%
- Downloads: 16.982%
- Average: 18.576%
- Dependent repos count: 21.559%
- Stargazers count: 21.577%
- Forks count: 22.654%
- Maintainers (1)
Dependencies
- auditwheel *
- biopython *
- codecov *
- coverage *
- cython *
- importlib-resources *
- setuptools >=46.4.0
- wheel *
- KSXGitHub/github-actions-deploy-aur v2.2.5 composite
- actions-rs/toolchain v1 composite
- actions/checkout v3 composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v3 composite
- actions/upload-artifact v2 composite
- docker/setup-qemu-action v2 composite
- pypa/cibuildwheel v2.11.3 composite
- pypa/gh-action-pypi-publish master composite
- rasmus-saks/release-a-changelog-action v1.0.1 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- codecov/codecov-action v3 composite
- cython *
- ipykernel *
- ipython *
- nbsphinx *
- pygments *
- pygments-style-monokailight *
- recommonmark *
- semantic_version *
- setuptools >=46.4
- sphinx *
Score: 9.994698432589512