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Open Sustainable Technology

https://github.com/histocleanqub/histoclean

HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
convolutional-neural-networks deep-learning gui gui-application image-analysis image-augmentation image-augmentation-preprocessing image-processing images
Added: over 1 year ago - Last Synced: 11 months ago - Created: May 05, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 31
  • Committers: 1
  • Issues: 4
  • Pull Requests: 0
https://github.com/nl-bioimaging/biomero

BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
biaflows bioimaging biomero cytomine fair high-content-screening high-performance-computing high-throughput-screening image-analysis omero python slurm
Added: over 1 year ago - Last Synced: 11 months ago - Created: May 10, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 164
  • Committers: 5
  • Issues: 4
  • Pull Requests: 3
  • Owner: NL-BioImaging
  • Stars: 7
  • Forks: 0
  • Packages: 2
  • Downloads: 411
https://github.com/nadeemlab/spt

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
biomarker-discovery clinical-workflow image-analysis python single-cell-analysis spatial-analysis tumor-microenvironment
Added: over 1 year ago - Last Synced: 11 months ago - Created: May 25, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2057
  • Committers: 9
  • Issues: 103
  • Pull Requests: 100
  • Owner: nadeemlab
  • Stars: 22
  • Forks: 2
  • Packages: 1
  • Downloads: 268
https://github.com/phasorpy/phasorpy

An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach
flim fluorescence-microscopy-imaging image-analysis phasor python
Added: over 1 year ago - Last Synced: 11 months ago - Created: July 06, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 18
  • Committers: 2
  • Issues: 7
  • Pull Requests: 22
  • Owner: phasorpy
  • Stars: 14
  • Forks: 6
  • Packages: 0
https://github.com/tlambert03/llspy

Lattice light-sheet post-processing utility.
image-analysis image-processing light-sheet microscopy
Added: over 1 year ago - Last Synced: 11 months ago - Created: July 04, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 808
  • Committers: 8
  • Issues: 34
  • Pull Requests: 13
  • Owner: tlambert03
  • Stars: 25
  • Forks: 6
  • Packages: 3
  • Downloads: 29
https://github.com/opennumismat/similarimagefinder


image-analysis image-hashing image-hashing-algorithms pyside6 python python3
Added: over 1 year ago - Last Synced: 11 months ago - Created: November 16, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 144
  • Committers: 5
  • Issues: 1
  • Pull Requests: 25