https://github.com/BiaPyX/BiaPy
Open source Python library for building bioimage analysis pipelines
https://github.com/BiaPyX/BiaPy
Keywords
biomedical-image-processing classification computer-vision convolutional-neural-networks deep-learning denoising image-processing image-segmentation instance-segmentation machine-learning medical-imaging object-detection python pytorch segmentation self-supervised-learning semantic-segmentation super-resolution
Keywords from Contributors
archiving measur transforms conversion observation animals generic compose optimize threads
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Open source Python library for building bioimage analysis pipelines
- Host: GitHub
- URL: https://github.com/BiaPyX/BiaPy
- Owner: BiaPyX
- License: mit
- Created: 2019-02-28T15:35:09.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2024-05-23T07:25:42.000Z (12 months ago)
- Last Synced: 2024-05-23T08:37:02.030Z (12 months ago)
- Topics: biomedical-image-processing, classification, computer-vision, convolutional-neural-networks, deep-learning, denoising, image-processing, image-segmentation, instance-segmentation, machine-learning, medical-imaging, object-detection, python, pytorch, segmentation, self-supervised-learning, semantic-segmentation, super-resolution
- Language: Jupyter Notebook
- Homepage: https://BiaPyX.github.io
- Size: 917 MB
- Stars: 113
- Watchers: 5
- Forks: 27
- Open Issues: 8
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE.md
- Code of conduct: CODE_OF_CONDUCT.md
Owner metadata
- Name: BiaPy
- Login: BiaPyX
- Email: [email protected]
- Kind: organization
- Description: Bioimage Analysis Pipelines in Python (BiaPy) Ecosystem
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/156199480?v=4
- Repositories: 5
- Last ynced at: 2024-05-14T00:11:39.217Z
- Profile URL: https://github.com/BiaPyX
GitHub Events
Total
- Create event: 29
- Release event: 24
- Issues event: 37
- Watch event: 34
- Delete event: 8
- Issue comment event: 58
- Push event: 157
- Pull request review comment event: 2
- Pull request review event: 4
- Pull request event: 31
- Fork event: 4
Last Year
- Create event: 29
- Delete event: 8
- Fork event: 4
- Issue comment event: 58
- Issues event: 37
- Pull request event: 31
- Pull request review comment event: 2
- Pull request review event: 4
- Push event: 157
- Release event: 24
- Watch event: 34
Committers metadata
Last synced: over 1 year ago
Total Commits: 1,308
Total Committers: 15
Avg Commits per committer: 87.2
Development Distribution Score (DDS): 0.15
Commits in past year: 332
Committers in past year: 9
Avg Commits per committer in past year: 36.889
Development Distribution Score (DDS) in past year: 0.355
| Name | Commits | |
|---|---|---|
| Daniel Franco | d****a@g****m | 1112 |
| Daniel Franco | d****o@d****g | 79 |
| Ignacio Arganda-Carreras | i****a@g****m | 60 |
| ClementCaporal | c****x@g****m | 16 |
| jansanrom | j****r@g****m | 14 |
| dependabot[bot] | 4****] | 7 |
| Lenka Backova | l****2@g****m | 5 |
| Aitor González-Marfil | a****d@g****m | 4 |
| Daniel Franco-Barranco | 3****o | 4 |
| IvanHCenalmor | i****r@g****m | 2 |
| Clément Caporal | c****t@g****m | 1 |
| ComplexOrganizationOfLivingMatter | p****s@u****s | 1 |
| Daniel Franco | d****o@a****s | 1 |
| Ignacio Arganda-Carreras | i****a@a****s | 1 |
| Seongbin Lim | s****m@p****u | 1 |
Committer domains:
- arganda-01.sw.ehu.es: 2
- polytechnique.edu: 1
- us.es: 1
- dipc.org: 1
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 25
Total pull requests: 12
Average time to close issues: 17 days
Average time to close pull requests: about 16 hours
Total issue authors: 7
Total pull request authors: 6
Average comments per issue: 1.6
Average comments per pull request: 0.25
Merged pull request: 10
Bot issues: 0
Bot pull requests: 0
Past year issues: 25
Past year pull requests: 12
Past year average time to close issues: 17 days
Past year average time to close pull requests: about 16 hours
Past year issue authors: 7
Past year pull request authors: 6
Past year average comments per issue: 1.6
Past year average comments per pull request: 0.25
Past year merged pull request: 10
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- danifranco (8)
- pr4deepr (5)
- iarganda (4)
- ClementCaporal (3)
- mcblache (2)
- Mohinta2892 (2)
- AAitorG (1)
Top Pull Request Authors
- ClementCaporal (5)
- danifranco (3)
- gnodar01 (1)
- iarganda (1)
- lenkaback (1)
- AAitorG (1)
Top Issue Labels
- enhancement (8)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 370 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 30
- Total maintainers: 1
pypi.org: biapy
BiaPy: Bioimage analysis pipelines in Python
- Homepage: https://biapyx.github.io
- Documentation: https://biapy.readthedocs.io/
- Licenses: MIT License Copyright (c) 2022 Daniel Franco-Barranco Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
- Latest release: 3.4.3 (published 12 months ago)
- Last Synced: 2024-06-06T12:02:24.100Z (11 months ago)
- Versions: 30
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 370 Last month
-
Rankings:
- Forks count: 8.739%
- Stargazers count: 9.34%
- Dependent packages count: 9.642%
- Average: 23.917%
- Dependent repos count: 67.948%
- Maintainers (1)
Dependencies
- nvidia/cuda 11.4.0-base-ubuntu20.04 build
- bioimageio.core ==0.5.9
- edt >=2.3.1
- fill-voids >=2.0.5
- h5py >=3.10.0
- imagecodecs >=2023.3.16
- imgaug >=0.4.0
- matplotlib >=3.7.1
- opencv-python >=4.7.0.72
- pandas >=1.5.3
- pydot >=1.4.2
- scikit-image >=0.21.0
- scikit-learn >=1.2.2
- tensorboardX >=2.6.2.2
- timm >=0.9.5
- torchinfo >=1.8.0
- torchmetrics >=1.0.3
- tqdm >=4.65.0
- yacs >=0.1.8
- zarr ==2.16.1
Score: 13.420042809306386