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Open Sustainable Technology

https://github.com/gibsramen/qadabra

Snakemake workflow for comparison of differential abundance ranks
bioinformatics differential-abundance machine-learning metagenomics microbiome pipeline snakemake workflow
Added: over 1 year ago - Last Synced: about 1 year ago - Created: May 04, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 60
  • Committers: 3
  • Issues: 16
  • Pull Requests: 23
  • Owner: biocore
  • Stars: 13
  • Forks: 4
  • Packages: 1
  • Downloads: 8
https://github.com/torognes/swarm

A robust and fast clustering method for amplicon-based studies
bioinformatics clustering fasta metabarcoding microbiome sequence
Added: over 1 year ago - Last Synced: about 1 year ago - Created: November 10, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 2873
  • Committers: 9
  • Issues: 102
  • Pull Requests: 5
  • Owner: torognes
  • Stars: 119
  • Forks: 23
  • Packages: 1
https://github.com/biocore/qadabra

Snakemake workflow for comparison of differential abundance ranks
bioinformatics differential-abundance machine-learning metagenomics microbiome pipeline snakemake workflow
Added: over 1 year ago - Last Synced: about 1 year ago - Created: May 04, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 96
  • Committers: 4
  • Issues: 41
  • Pull Requests: 51
  • Owner: biocore
  • Stars: 13
  • Forks: 4
  • Packages: 0
https://github.com/gibsramen/xebec

Snakemake pipeline for microbiome diversity effect size benchmarking
bioinformatics microbiome pipeline snakemake
Added: over 1 year ago - Last Synced: about 1 year ago - Created: March 22, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 119
  • Committers: 2
  • Issues: 0
  • Pull Requests: 14
  • Owner: gibsramen
  • Stars: 5
  • Forks: 2
  • Packages: 1
  • Downloads: 51
https://github.com/WrightonLabCSU/DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
annotation bioinformatics genomics metagenome-assembled-genomes metagenomics microbiome viral-genomics viral-metagenomics
Added: over 1 year ago - Last Synced: about 1 year ago - Created: February 11, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 765
  • Committers: 18
  • Issues: 165
  • Pull Requests: 12
https://github.com/biocore/redbiom

Sample search by metadata and features
bioinformatics biom microbiome qiime
Added: over 1 year ago - Last Synced: about 1 year ago - Created: January 13, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 204
  • Committers: 8
  • Issues: 63
  • Pull Requests: 42
  • Owner: biocore
  • Stars: 43
  • Forks: 20
  • Packages: 2
  • Downloads: 282