https://github.com/vijaybarve/taxotools
Tools to Handle Taxonomic Lists
package
r
taxonomy
Added: 11 months ago - Last Synced: 11 months ago
- Created: August 29, 2018
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 148
- Committers: 2
- Issues: 101
- Pull Requests: 0
- Owner: vijaybarve
- Stars: 5
- Forks: 1
- Packages: 1
- Downloads: 286

https://github.com/hancockinformatics/abcindex
A web app to calculate Anti-Biofilm Combination Index (ABCI)
assay
biofilm
bioinformatics
r
shiny
Added: about 1 year ago - Last Synced: 11 months ago
- Created: November 07, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits:
- Committers:
- Issues: 0
- Pull Requests: 28
- Owner: hancockinformatics
- Stars: 2
- Forks: 0
- Packages: 0

https://github.com/cdcgov/rnssp-shiny-apps
Rnssp Shiny Apps are custom-built applications with seamless integration to the Rnssp R package.
cdc
essence
essence-api
nssp
nssp-cop
shiny
shiny-apps
Added: about 1 year ago - Last Synced: 11 months ago
- Created: July 03, 2023

https://github.com/aim-rsf/browsemetadata
An R package (and accompanying resources) to help a researcher browse metadata for health datasets
health-data
metadata
mltc
r
rpackage
sail-databank
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 07, 2023

https://github.com/showteeth/scfetch
Access and Format Single-cell RNA-seq Datasets from Public Resources
bam
cellxgene
fastq
format-conversion-tool
geo
human-cell-atlas
panglaodb
single-cell-rna-seq
sra
ucsc-cell-browser
zenodo
Added: over 1 year ago - Last Synced: 11 months ago
- Created: July 12, 2023

https://github.com/plotly/plotly.R
An interactive graphing library for R
d3js
data-visualization
ggplot2
javascript
plotly
r
r-package
rstats
shiny
webgl
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 21, 2013

https://github.com/cwwhitney/hortiprimed
Process of modeling the expected effects of priming tomato plants
bayes
bayesian
monte-carlo
priming
tomato
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 05, 2022

https://github.com/tadascience/react
β’οΈ Reactivity helper for 'shiny' β¨
r
shiny
shiny-r
Added: over 1 year ago - Last Synced: 11 months ago
- Created: January 26, 2024
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 34
- Committers: 1
- Issues: 2
- Pull Requests: 0
- Owner: tadascience
- Stars: 6
- Forks: 0
- Packages: 1
- Downloads: 203

https://github.com/friendly/heplots
Visualizing Hypothesis Tests in Multivariate Linear Models, http://friendly.github.io/heplots/
linear-hypotheses
matrices
multivariate-linear-models
plot
repeated-measure-designs
visualizing-hypothesis-tests
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 27, 2013

https://github.com/lorenacalvoperez/practicas_fuentes_c
Repositorio en el que se desarrollarΓ‘ el estudio, a nivel de EspaΓ±a, sobre la influencia de diversos factores en la Necesidad de AtenciΓ³n PsicolΓ³gica (NAT).
climate-data
fuentes-de-datos
ingenieria-de-la-salud
r-programming
rstudio
salary-data
Added: over 1 year ago - Last Synced: 11 months ago
- Created: September 18, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 126
- Committers: 6
- Issues: 5
- Pull Requests: 0
- Owner: Lorenacalvoperez
- Stars: 0
- Forks: 0
- Packages: 0

https://github.com/hzambran/hydrotsm
Time Series Management and Analysis for Hydrological Modelling
hydrology
hydrology-modeling
hydrology-statistical
r
resource
water-resources
Added: over 1 year ago - Last Synced: 11 months ago
- Created: January 22, 2015

https://github.com/tgve/tgver
TGVE R package
geospatial-analysis
geospatial-visualization
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 05, 2021

https://github.com/sor16/bdrc
Fits a discharge rating curve based on the power-law and the generalized power-law from data on paired water elevation and discharge measurements in a given river using a Bayesian hierarchical model as described in Hrafnkelsson et al. (2022)
bayesian-inference
cran-r
power-law
r
r-package
rivers
Added: over 1 year ago - Last Synced: 11 months ago
- Created: June 03, 2015

https://github.com/agmip-ggcmi/cropcalendars
R-package for simulating climate-driven crop calendars
adaptation
agmip
agriculture
climate-change
crop-model
ggcmi
harvest-date
lpjml
r
sowing-date
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 16, 2022
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 146
- Committers: 4
- Issues: 4
- Pull Requests: 1
- Owner: AgMIP-GGCMI
- Stars: 8
- Forks: 4
- Packages: 0

https://github.com/ipeaGIT/r5r
gtfs
java
r
r5
router
routing
transport
transport-networks
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 06, 2020

https://github.com/snaketron/clustirr
Clustering of immune receptor repertoires
b-cell-receptor
bioinformatics
clustering
immunoinformatics
immunology
quantitative-methods
rep-seq
repertoire-analysis
t-cell-receptor
Added: over 1 year ago - Last Synced: 11 months ago
- Created: March 09, 2023

https://github.com/idblr/geo_us_lung_cancer_and_smoking
Companion for the 2023 manuscript in Cancer Epidemiology, Biomarkers & Prevention entitled "Geographic Patterns in U.S. Lung Cancer Mortality and Cigarette Smoking"
bivariate-analysis
bivariate-mapping
cigarette-smoking
cigarette-smoking-prevalence
county-level
geospatial-analysis
geospatial-clustering
lung-cancer
manuscript
manuscript-figures
mortality-rates
r
rstats
Added: over 1 year ago - Last Synced: 11 months ago
- Created: January 15, 2022

https://github.com/erocoar/gghalves
βοΈ Easy half-half geoms in ggplot2
dataviz
ggplot-extension
ggplot2
r
visualization
Added: over 1 year ago - Last Synced: 11 months ago
- Created: September 03, 2019

https://github.com/lgatto/msnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
bioconductor
bioinformatics
mass-spectrometry
proteomics
proteomics-data
r
visualisation
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 02, 2010

https://github.com/jonchang/fishtree
The R interface to the Fish Tree of Life
cran
phylogeny
r
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 14, 2018

https://github.com/harin-git/tptr
R package for Timbre Perception Test (TPT)
measure
timbre
Added: over 1 year ago - Last Synced: 11 months ago
- Created: February 07, 2021

https://github.com/trangdata/treeheatr
Heatmap-integrated Decision Tree Visualizations
dataviz
decision-trees
ggplot
heatmap
r
visualization
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 19, 2020

https://github.com/torvaney/ggsoccer
Plot soccer event data in R/ggplot2
event-data
football
ggplot2
plot
r
rstats
soccer
Added: over 1 year ago - Last Synced: 11 months ago
- Created: March 08, 2017

https://github.com/mplex/multigraph
multigraph: Plot and Manipulate Multigraphs in R
bipartite-graphs
bipartite-network
graph
graph-visualization
network-analysis
network-visualization
plot
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 12, 2016

https://github.com/r-data-science/rblogapps
This package includes all apps assiocated with the r-data-science blog. Additionally, package includes the primary app datasets.
blog
cran
r
r-language
r-package
shiny-apps
shiny-r
Added: over 1 year ago - Last Synced: 11 months ago
- Created: December 11, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 39
- Committers: 2
- Issues: 0
- Pull Requests: 2
- Owner: r-data-science
- Stars: 0
- Forks: 0
- Packages: 0

https://github.com/epigen/mixscape_seurat
A Snakemake workflow for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's method Mixscape.
bioinformatics
biomedical-data-science
perturbation-analysis
sccrispr-seq
scrna-seq
single-cell
snakemake
snrna-seq
visualization
workflow
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 14, 2022

https://github.com/epigen/dea_seurat
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
bioinformatics
biomedical-data-science
differential-expression-analysis
scrna-seq
single-cell
snakemake
snrna-seq
visualization
volcano-plot
workflow
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 20, 2022

https://github.com/epigen/dea_limma
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
atac-seq
bioinformatics
biomedical-data-science
chip-seq
differential-expression-analysis
limma
limma-trend
limma-voom
r
rna-seq
scrna-seq
snakemake
statistics
visualization
volcano-plot
workflow
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 12, 2022

https://github.com/core-bioinformatics/clustassess
Tools for assessing clustering robustness
bioinformatics
clustering
genomics
machine-learning
parameter-optimization
robustness
single-cell
unsupervised-learning
Added: over 1 year ago - Last Synced: 11 months ago
- Created: March 26, 2021
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 177
- Committers: 4
- Issues: 5
- Pull Requests: 0
- Owner: Core-Bioinformatics
- Stars: 19
- Forks: 3
- Packages: 2
- Downloads: 274

https://github.com/kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
cancer-genomics
cnv-detection
lineage-tracing
phylogeny
single-cell
single-cell-analysis
single-cell-rna-seq
spatial-transcriptomics
Added: over 1 year ago - Last Synced: 11 months ago
- Created: May 25, 2021
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 790
- Committers: 10
- Issues: 162
- Pull Requests: 10
- Owner: kharchenkolab
- Stars: 156
- Forks: 22
- Packages: 1
- Downloads: 770

https://github.com/ghozayel/lextale
The LexTALE-package calculates the % correctAv score for the LexTALE-test, English, German and Dutch versions.
applied-linguistics
dutch
dutch-language
english-language
experimental
experimental-language
german-language
languages
lexical
lextale
linguistic-analysis
rstats
second-language-acquisition
second-language-research
vocabulary
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 17, 2022

https://github.com/gongcastro/bvq
Development package for the Barcelona Vocabulary Questonnaire (BVQ)
bilingualism
language
psycholinguistics
r
r-package
rstats
vocabulary
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 18, 2022
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 256
- Committers: 4
- Issues: 16
- Pull Requests: 32
- Owner: gongcastro
- Stars: 0
- Forks: 0
- Packages: 0

https://github.com/shixiangwang/sigminer
π² An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
bayesian-nmf
bioinformatics
cancer-research
cnv
copynumber-signatures
cosmic-signatures
dbs
easy-to-use
indel
mutational-signatures
nmf
nmf-extraction
r
sbs
signature-extraction
somatic-mutations
somatic-variants
visualization
Added: over 1 year ago - Last Synced: 11 months ago
- Created: December 30, 2018
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 1144
- Committers: 8
- Issues: 99
- Pull Requests: 18
- Owner: ShixiangWang
- Stars: 134
- Forks: 18
- Packages: 1
- Downloads: 841

https://github.com/hurielreichel/tidyopeneo
tidyopeneo : Wrap dplyr functions for openEO datacubes
earthobservation
openeo
tidyverse
Added: over 1 year ago - Last Synced: 11 months ago
- Created: September 04, 2022
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 29
- Committers: 3
- Issues: 6
- Pull Requests: 4
- Owner: hurielreichel
- Stars: 1
- Forks: 1
- Packages: 0

https://github.com/meirelesff/siconvr
An R package to fetch data from Plataforma +Brasil (Siconv)
brazil
datasets
plataforma-brasil
public-data
siconv
Added: over 1 year ago - Last Synced: 11 months ago
- Created: March 18, 2021
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 31
- Committers: 3
- Issues: 6
- Pull Requests: 7
- Owner: meirelesff
- Stars: 10
- Forks: 2
- Packages: 1
- Downloads: 211

https://github.com/mt1022/cubar
R Package for Codon Usage Bias Analysis
bioinformatics
codon-usage
machine-learning
r-package
sequence-analysis
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 20, 2021

https://github.com/stephenturner/kgp
1000 Genomes Project Metadata R Package
1000genomes
bioinformatics
genetics
genomics
metadata
population-genetics
sequencing
Added: over 1 year ago - Last Synced: 11 months ago
- Created: September 09, 2022
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 30
- Committers: 1
- Issues: 7
- Pull Requests: 2
- Owner: stephenturner
- Stars: 18
- Forks: 3
- Packages: 1
- Downloads: 184

https://github.com/cmap/cmapr
Tools for manipulating annotated data matrices
bioconductor
bioinformatics
cmap
Added: over 1 year ago - Last Synced: 11 months ago
- Created: March 28, 2017

https://github.com/embl-hentze-group/dewseq
R/Bioconductor package for e/iCLIP data analysis
bioinformatics
eclip
ngs-analysis
Added: over 1 year ago - Last Synced: 11 months ago
- Created: September 23, 2019
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 235
- Committers: 7
- Issues: 8
- Pull Requests: 0
- Owner: EMBL-Hentze-group
- Stars: 5
- Forks: 0
- Packages: 1
- Downloads: 5,520

https://github.com/hclimente/martini
πΈR version of SConES, a systems-biology approach to GWAS.
bioinformatics
genomics
gwas
network-analysis
r-package
snps
systems-biology
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 06, 2017

https://github.com/zhilongjia/cogena
co-expressed gene-set enrichment analysis
bioconductor
bioinformatics
package
r
Added: over 1 year ago - Last Synced: 11 months ago
- Created: February 13, 2015
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 416
- Committers: 12
- Issues: 9
- Pull Requests: 1
- Owner: zhilongjia
- Stars: 12
- Forks: 7
- Packages: 1
- Downloads: 17,890

https://github.com/tnathu-ai/skin-cancer-in-r
australia
r-programming
shiny-apps
skin-cancer
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 18, 2023

https://github.com/seroanalytics/serosim
An R package for simulating serosurvey data using custom models for the data-generating process
antibodies
infectious-disease-epidemiology
serological-surveys
serology
serosurvey
simulation-framework
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 04, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 151
- Committers: 3
- Issues: 1
- Pull Requests: 1
- Owner: seroanalytics
- Stars: 3
- Forks: 2
- Packages: 0

https://github.com/noaa-afsc/nfs-berpac
Telemetry data and analysis from bio-logger deployments on northern fur seals in the Bering and Pacific
alaska
animal-movement-tracking
california
marine-mammals
northern-fur-seals
protected-species
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 05, 2022

https://github.com/smwindecker/mixchar
Repository for the R package 'mixchar'
decay
thermogravimetry
traits
Added: over 1 year ago - Last Synced: 11 months ago
- Created: September 10, 2017
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 345
- Committers: 7
- Issues: 1
- Pull Requests: 5
- Owner: smwindecker
- Stars: 9
- Forks: 1
- Packages: 1
- Downloads: 144

https://github.com/alphaprime7/tidydenovix
Cleans spectrophotometry data from the Denovix DS-X
data-analysis
dna
research
rna
spectrophotometry
Added: over 1 year ago - Last Synced: 11 months ago
- Created: December 16, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 63
- Committers: 2
- Issues: 0
- Pull Requests: 2
- Owner: AlphaPrime7
- Stars: 1
- Forks: 0
- Packages: 1
- Downloads: 208

https://github.com/dfsp-spirit/fsbrain
R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
3d
brain
dti
freesurfer
mesh
mri
neuroimaging
r
research
surface
visualization
voxel
Added: over 1 year ago - Last Synced: 11 months ago
- Created: September 17, 2019
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 1385
- Committers: 3
- Issues: 51
- Pull Requests: 3
- Owner: dfsp-spirit
- Stars: 61
- Forks: 13
- Packages: 1
- Downloads: 495

https://github.com/paicecode/paice
Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. (2022) <doi:10.1111/jbi.14341>.
biogeography
colonization
cran
island
r-package
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 20, 2020

https://github.com/ftwkoopmans/goat
GOAT: efficient and robust identification of gene set enrichment
bioinformatics
geneset-enrichment
geneset-enrichment-analysis
Added: over 1 year ago - Last Synced: 11 months ago
- Created: December 08, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 12
- Committers: 2
- Issues: 4
- Pull Requests: 0
- Owner: ftwkoopmans
- Stars: 4
- Forks: 0
- Packages: 1
- Downloads: 630

https://github.com/nelson-gon/rfdc
An R interface to FoodData Central
agriculture
fdc
food
html
json
nutrition
nutrition-information
nutritionfacts
r
r-package
r-stats
rest
rest-api
rstats
s4
usda
user-interface
xml
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 15, 2019
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 37
- Committers: 1
- Issues: 7
- Pull Requests: 0
- Owner: Nelson-Gon
- Stars: 1
- Forks: 0
- Packages: 0

https://github.com/valvaletl/smmt
R tool to get municipality mapping table between two time points for Swiss municipalities
cran
data-management
municipalities
r
statistics
switzerland
Added: over 1 year ago - Last Synced: 11 months ago
- Created: February 15, 2021

https://github.com/rstudio/pointblank
Data quality assessment and metadata reporting for data frames and database tables
data-assertions
data-checker
data-dictionaries
data-frames
data-inference
data-management
data-profiler
data-quality
data-validation
data-verification
database-tables
easy-to-understand
reporting-tool
schema-validation
testing-tools
yaml-configuration
Added: over 1 year ago - Last Synced: 11 months ago
- Created: February 24, 2017

https://github.com/accelstab/accelstab
This package utilises the Ε estΓ‘kβBerggren equation alongside the Arrhenius equation to make a simple and consistent way for a user to carry out the calculations and predictions required by accelerated stability studies.
arrhenius
kinetics
modelling
non-linear-model
pharmaceuticals
pharmacokinetics
sestak-berggren
stability
statistics
temperature
temperature-excursion
vaccine
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 16, 2023

https://github.com/kwb-r/kwb.dwd
R Package to Access Information Provided by Deutscher Wetterdienst (DWD)
data-import
dwd
project-amarex
project-flextreat
project-flusshygiene
r
r-package
rain
rstats
Added: over 1 year ago - Last Synced: 11 months ago
- Created: February 24, 2019

https://github.com/karthik/wesanderson
A Wes Anderson color palette for R
color-palette
data-visualization
plot
r
wes-anderson-palettes
Added: over 1 year ago - Last Synced: 11 months ago
- Created: March 18, 2014

https://github.com/csasaka19/r_credit
Project for credit card transactions and its analysis in R
ggplot2
plotly
r
shiny-r
shinydashboard
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 16, 2023

https://github.com/mlr-org/mlr3pipelines
Dataflow Programming for Machine Learning in R
bagging
data-science
dataflow-programming
ensemble-learning
machine-learning
mlr3
pipelines
preprocessing
r
r-package
stacking
Added: over 1 year ago - Last Synced: 11 months ago
- Created: October 10, 2017

https://github.com/appsilon/reactable.extras
Extra features for reactable package
r
reactable
shiny
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 11, 2023

https://github.com/eblondel/geonapi
R Interface to GeoNetwork API
api
geonetwork
interface
metadata
r
spatial
Added: 11 months ago - Last Synced: 11 months ago
- Created: March 09, 2017
