https://github.com/biocore/qadabra
Snakemake workflow for comparison of differential abundance ranks
https://github.com/biocore/qadabra
Keywords
bioinformatics differential-abundance machine-learning metagenomics microbiome pipeline snakemake workflow
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Snakemake workflow for comparison of differential abundance ranks
- Host: GitHub
- URL: https://github.com/biocore/qadabra
- Owner: biocore
- License: bsd-3-clause
- Created: 2022-05-04T15:55:21.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-03-22T21:58:24.000Z (about 1 year ago)
- Last Synced: 2024-04-26T05:22:55.938Z (about 1 year ago)
- Topics: bioinformatics, differential-abundance, machine-learning, metagenomics, microbiome, pipeline, snakemake, workflow
- Language: Python
- Homepage:
- Size: 15.8 MB
- Stars: 13
- Watchers: 6
- Forks: 4
- Open Issues: 11
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: biocore
- Login: biocore
- Email:
- Kind: organization
- Description: Collaboratively developed bioinformatics software.
- Website: http://biocore.github.io/
- Location: Cyberspace
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/6241857?v=4
- Repositories: 76
- Last ynced at: 2023-03-11T02:51:03.087Z
- Profile URL: https://github.com/biocore
GitHub Events
Total
- Create event: 4
- Release event: 1
- Issues event: 19
- Watch event: 6
- Member event: 1
- Issue comment event: 28
- Push event: 9
- Pull request review event: 2
- Pull request review comment event: 2
- Pull request event: 17
- Fork event: 3
Last Year
- Create event: 4
- Fork event: 3
- Issue comment event: 28
- Issues event: 19
- Member event: 1
- Pull request event: 17
- Pull request review comment event: 2
- Pull request review event: 2
- Push event: 9
- Release event: 1
- Watch event: 6
Committers metadata
Last synced: 11 months ago
Total Commits: 96
Total Committers: 4
Avg Commits per committer: 24.0
Development Distribution Score (DDS): 0.375
Commits in past year: 30
Committers in past year: 4
Avg Commits per committer in past year: 7.5
Development Distribution Score (DDS) in past year: 0.167
| Name | Commits | |
|---|---|---|
| Gibraan Rahman | g****n@e****u | 60 |
| Yang Chen | 6****2 | 33 |
| Gibraan Rahman | g****n@g****m | 2 |
| AmandaBirmingham | l****s@i****m | 1 |
Committer domains:
- imladris.com: 1
- eng.ucsd.edu: 1
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 41
Total pull requests: 51
Average time to close issues: 23 days
Average time to close pull requests: 16 days
Total issue authors: 8
Total pull request authors: 3
Average comments per issue: 0.85
Average comments per pull request: 0.14
Merged pull request: 47
Bot issues: 0
Bot pull requests: 0
Past year issues: 15
Past year pull requests: 18
Past year average time to close issues: about 2 months
Past year average time to close pull requests: 20 days
Past year issue authors: 5
Past year pull request authors: 3
Past year average comments per issue: 1.8
Past year average comments per pull request: 0.33
Past year merged pull request: 17
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- gibsramen (21)
- sherlyn99 (5)
- 411an13 (4)
- ahdilmore (4)
- yangchen2 (4)
- bdpessem (1)
- nearinj (1)
- SAlkh90-temp (1)
Top Pull Request Authors
- gibsramen (27)
- yangchen2 (22)
- AmandaBirmingham (2)
Top Issue Labels
Top Pull Request Labels
Dependencies
- actions/checkout v2 composite
- conda-incubator/setup-miniconda v2 composite
- biom-format *
- click *
- iow *
- pandas >=1.0.0
- scikit-bio *
Score: 4.564348191467836