https://github.com/poseidonchan/tape
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
https://github.com/poseidonchan/tape
Keywords
bioinformatics cell-composition-analysis cell-type-specific-gene-expression-analysis computational-biology deep-learning machine-learning precision-medicine rna-seq single-cell-analysis
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
- Host: GitHub
- URL: https://github.com/poseidonchan/tape
- Owner: poseidonchan
- License: gpl-3.0
- Created: 2021-07-15T04:35:33.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2024-04-03T03:19:15.000Z (about 1 year ago)
- Last Synced: 2024-05-03T07:15:29.401Z (about 1 year ago)
- Topics: bioinformatics, cell-composition-analysis, cell-type-specific-gene-expression-analysis, computational-biology, deep-learning, machine-learning, precision-medicine, rna-seq, single-cell-analysis
- Language: Jupyter Notebook
- Homepage: https://sctape.readthedocs.io/
- Size: 161 MB
- Stars: 42
- Watchers: 3
- Forks: 10
- Open Issues: 9
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name:
- Login: poseidonchan
- Email:
- Kind: user
- Description:
- Website:
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/43901301?v=4
- Repositories: 1
- Last ynced at: 2023-03-08T19:20:42.855Z
- Profile URL: https://github.com/poseidonchan
GitHub Events
Total
- Create event: 2
- Release event: 1
- Issues event: 10
- Watch event: 45
- Delete event: 3
- Issue comment event: 25
- Public event: 1
- Push event: 35
- Pull request event: 5
- Fork event: 10
Last Year
- Fork event: 4
- Issue comment event: 11
- Issues event: 4
- Pull request event: 3
- Watch event: 16
Committers metadata
Last synced: about 1 year ago
Total Commits: 102
Total Committers: 3
Avg Commits per committer: 34.0
Development Distribution Score (DDS): 0.265
Commits in past year: 0
Committers in past year: 0
Avg Commits per committer in past year: 0.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Yanshuo CHEN | c****8@m****n | 75 |
| poseidonchan | 4****n | 21 |
| Susanxuan | 8****n | 6 |
Committer domains:
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 10
Total pull requests: 5
Average time to close issues: about 21 hours
Average time to close pull requests: 2 days
Total issue authors: 9
Total pull request authors: 4
Average comments per issue: 2.2
Average comments per pull request: 0.6
Merged pull request: 2
Bot issues: 0
Bot pull requests: 1
Past year issues: 4
Past year pull requests: 2
Past year average time to close issues: N/A
Past year average time to close pull requests: 8 days
Past year issue authors: 4
Past year pull request authors: 2
Past year average comments per issue: 2.0
Past year average comments per pull request: 1.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- renruichen (2)
- alexdray86 (1)
- doulijun777 (1)
- dr-michael-haley (1)
- fanying2015 (1)
- fojackson8 (1)
- Junjie-Hu (1)
- robinredX (1)
- solitudetuzi (1)
Top Pull Request Authors
- poseidonchan (2)
- loganylchen (1)
- oyew707 (1)
- dependabot[bot] (1)
Top Issue Labels
Top Pull Request Labels
- dependencies (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 146 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 24
- Total maintainers: 1
pypi.org: sctape
deep learning tools for bulk RNA-seq deconvolution and gene expression analysis
- Homepage: https://github.com/poseidonchan/TAPE
- Documentation: https://sctape.readthedocs.io/
- Licenses: GPL-3.0 License
- Latest release: 1.1.2 (published about 2 years ago)
- Last Synced: 2024-05-25T23:42:20.303Z (12 months ago)
- Versions: 24
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 146 Last month
-
Rankings:
- Dependent packages count: 10.109%
- Stargazers count: 10.717%
- Forks count: 11.925%
- Average: 15.165%
- Downloads: 21.517%
- Dependent repos count: 21.559%
- Maintainers (1)
Score: 10.02765019515655