https://github.com/nadeemlab/spt
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
biomarker-discovery
clinical-workflow
image-analysis
python
single-cell-analysis
spatial-analysis
tumor-microenvironment
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: May 25, 2021
https://github.com/kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
cancer-genomics
cnv-detection
lineage-tracing
phylogeny
single-cell
single-cell-analysis
single-cell-rna-seq
spatial-transcriptomics
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: May 25, 2021
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: R
- Commits: 790
- Committers: 10
- Issues: 162
- Pull Requests: 10
- Owner: kharchenkolab
- Stars: 156
- Forks: 22
- Packages: 1
- Downloads: 770
https://github.com/poseidonchan/tape
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
bioinformatics
cell-composition-analysis
cell-type-specific-gene-expression-analysis
computational-biology
deep-learning
machine-learning
precision-medicine
rna-seq
single-cell-analysis
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: July 15, 2021
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Jupyter Notebook
- Commits: 102
- Committers: 3
- Issues: 10
- Pull Requests: 5
- Owner: poseidonchan
- Stars: 42
- Forks: 10
- Packages: 1
- Downloads: 146
