Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/althonos/lightmotif

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
bioinformatics genomics pssm rust-library sequence-analysis sequence-motif simd
Added: 11 months ago - Last Synced: 11 months ago - Created: April 30, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Rust
  • Commits:
  • Committers:
  • Issues: 0
  • Pull Requests: 4
  • Owner: althonos
  • Stars: 36
  • Forks: 2
  • Packages: 6
  • Downloads: 13,920
https://github.com/mt1022/cubar

R Package for Codon Usage Bias Analysis
bioinformatics codon-usage machine-learning r-package sequence-analysis
Added: over 1 year ago - Last Synced: 11 months ago - Created: April 20, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 121
  • Committers: 2
  • Issues: 4
  • Pull Requests: 0
  • Owner: mt1022
  • Stars: 5
  • Forks: 1
  • Packages: 1
  • Downloads: 268
https://github.com/althonos/peptides.py

Physicochemical properties, indices and descriptors for amino-acid sequences.
bioinformatics protein pure-python qsar-models sequence-analysis
Added: over 1 year ago - Last Synced: 11 months ago - Created: October 20, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 99
  • Committers: 1
  • Issues: 4
  • Pull Requests: 0
  • Owner: althonos
  • Stars: 57
  • Forks: 9
  • Packages: 1
  • Downloads: 549