https://github.com/mt1022/cubar
R Package for Codon Usage Bias Analysis
https://github.com/mt1022/cubar
Keywords
bioinformatics codon-usage machine-learning r-package sequence-analysis
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
R Package for Codon Usage Bias Analysis
- Host: GitHub
- URL: https://github.com/mt1022/cubar
- Owner: mt1022
- License: other
- Created: 2021-04-20T13:22:41.000Z (about 4 years ago)
- Default Branch: main
- Last Pushed: 2024-04-24T13:36:58.000Z (about 1 year ago)
- Last Synced: 2024-04-24T16:49:25.009Z (about 1 year ago)
- Topics: bioinformatics, codon-usage, machine-learning, r-package, sequence-analysis
- Language: R
- Homepage: https://mt1022.github.io/cubar/
- Size: 16.1 MB
- Stars: 5
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Hong Zhang
- Login: mt1022
- Email:
- Kind: user
- Description: Evolution & Functional Genomics
- Website:
- Location: Lanzhou, China
- Twitter:
- Company: Lanzhou University
- Icon url: https://avatars.githubusercontent.com/u/10368050?v=4
- Repositories: 2
- Last ynced at: 2023-05-05T04:47:23.056Z
- Profile URL: https://github.com/mt1022
GitHub Events
Total
- Create event: 8
- Release event: 4
- Issues event: 8
- Watch event: 8
- Issue comment event: 14
- Member event: 1
- Public event: 1
- Push event: 98
- Fork event: 2
Last Year
- Create event: 8
- Fork event: 2
- Issue comment event: 14
- Issues event: 8
- Member event: 1
- Public event: 1
- Push event: 98
- Release event: 4
- Watch event: 8
Committers metadata
Last synced: over 1 year ago
Total Commits: 121
Total Committers: 2
Avg Commits per committer: 60.5
Development Distribution Score (DDS): 0.017
Commits in past year: 103
Committers in past year: 1
Avg Commits per committer in past year: 103.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Hong Zhang | m****2 | 119 |
| mt1022 | m****g@g****m | 2 |
Committer domains:
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 4
Total pull requests: 0
Average time to close issues: 4 days
Average time to close pull requests: N/A
Total issue authors: 2
Total pull request authors: 0
Average comments per issue: 3.75
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0
Past year issues: 4
Past year pull requests: 0
Past year average time to close issues: 4 days
Past year average time to close pull requests: N/A
Past year issue authors: 2
Past year pull request authors: 0
Past year average comments per issue: 3.75
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- mt1022 (3)
- avvypaks (1)
Top Pull Request Authors
Top Issue Labels
- documentation (1)
- question (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- cran: 268 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
cran.r-project.org: cubar
Codon Usage Bias Analysis
- Homepage: https://github.com/mt1022/cubar
- Documentation: http://cran.r-project.org/web/packages/cubar/cubar.pdf
- Licenses: MIT + file LICENSE
- Latest release: 0.5.0 (published over 1 year ago)
- Last Synced: 2024-05-25T08:42:01.357Z (12 months ago)
- Versions: 3
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 268 Last month
-
Rankings:
- Stargazers count: 28.195%
- Forks count: 28.347%
- Dependent packages count: 28.762%
- Dependent repos count: 34.452%
- Average: 41.655%
- Downloads: 88.52%
- Maintainers (1)
Dependencies
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- R >= 4.1.0 depends
- Biostrings >= 2.60.0 imports
- IRanges >= 2.34.0 imports
- data.table >= 1.14.0 imports
- ggplot2 >= 3.3.5 imports
- rlang >= 0.4.11 imports
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
Score: 7.897296472595885