Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/gess-research-group/pyshbundle

PySHbundle: A Python tool for processing GRACE gravimetry data into global surface mass change datasets - Published in JOSS (2026)
geodesy gravimetry hydrology spherical-harmonics terrestrial-water-storage water
Added: 3 days ago - Last Synced: 3 days ago - Created: September 21, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 641
  • Committers: 8
  • Issues: 9
  • Pull Requests: 15
https://github.com/schmidtdse/kigali-sim

Kigali Sim: Open source simulation toolkit for modeling substances and policies related to the Montreal Protocol - Published in JOSS (2026)
antlr atmospheric-modelling environment java modeling-and-simulation policy wasm
Added: 24 days ago - Last Synced: 24 days ago - Created: September 16, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Java
  • Commits:
  • Committers:
  • Issues: 21
  • Pull Requests: 99
https://github.com/phes-odm/phes-odm

Aims to improve wastewater monitoring through interoperable data by providing robust support for reporting of biological, toxic or other health hazards.
covid-19 covid19 data-dictionary metadata naming-conventions odm sars-cov-2 vocabulary wastewater
Added: 24 days ago - Last Synced: 3 days ago - Created: October 03, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 776
  • Committers: 16
  • Issues: 1
  • Pull Requests: 0
  • Owner: PHES-ODM
  • Stars: 57
  • Forks: 18
  • Packages: 0
https://github.com/ncsa/neat

Enhancing short-read sequencing simulation: Updates to NEAT - Published in JOSS (2026)
bioinformatics bioinformatics-tool
Added: 28 days ago - Last Synced: 28 days ago - Created: March 19, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2331
  • Committers: 32
  • Issues: 49
  • Pull Requests: 36
  • Owner: ncsa
  • Stars: 71
  • Forks: 24
  • Packages: 0
https://github.com/becksteinlab/zarrtraj

Zarrtraj: A Python package for streaming molecular dynamics trajectories from cloud services - Published in JOSS (2026)
file-format mdanalysis molecular-dynamics streaming zarr
Added: 30 days ago - Last Synced: 30 days ago - Created: January 10, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 294
  • Committers: 4
  • Issues: 53
  • Pull Requests: 72
  • Owner: Becksteinlab
  • Stars: 9
  • Forks: 2
  • Packages: 1
  • Downloads: 190
https://github.com/dtuwindenergy/windgym

WindGym: A Reinforcement Learning Environment for Wind Farm Control - Published in JOSS (2026)
control reinforcement-learning windfarm
Added: about 1 month ago - Last Synced: about 1 month ago - Created: April 11, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 2
  • Pull Requests: 0
https://github.com/kumes/chatai4r

chatAI4R: Interactive Artificial Intelligence toolkit for Data Science in R - Published in JOSS (2026)
ai bioinformatics chatgpt gpt image image-generation r
Added: 2 months ago - Last Synced: 2 months ago - Created: April 29, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 292
  • Committers: 3
  • Issues: 8
  • Pull Requests: 5
  • Owner: kumeS
  • Stars: 20
  • Forks: 3
  • Packages: 1
  • Downloads: 239
https://github.com/worldbank/geoe3

Aims to propose a novel methodology and generate a geospatial open-source tool for mapping the enabling environments for women in a country that can inform new energy projects to support the advancement of women's economic empowerment in small island developing states while contributing to closing gender gaps in employment in the renewable energy sector.
accessibility employment gender infrastructure jobs qgis-plugin spatial spatial-barriers worldbank worldbank-gost
Added: 2 months ago - Last Synced: 6 days ago - Created: January 25, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1994
  • Committers: 12
  • Issues: 19
  • Pull Requests: 4
  • Owner: worldbank
  • Stars: 10
  • Forks: 9
  • Packages: 0
https://github.com/irll/hierarchycraft

HierarchyCraft: A Benchmark Builder for Hierarchical Reasoning - Published in JOSS (2026)
hierarchical-planning hierarchical-reasoning hierarchical-reinforcement-learning hierarchy minecraft minigrid python reinforcement-learning-environment
Added: 2 months ago - Last Synced: 2 months ago - Created: February 12, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1050
  • Committers: 5
  • Issues: 4
  • Pull Requests: 53
  • Owner: IRLL
  • Stars: 24
  • Forks: 6
  • Packages: 1
  • Downloads: 157
https://github.com/colmduff/optigob

OptiGob: A decision support tool for Agriculture, Forestry and Other Land Use transitions - Published in JOSS (2026)
argiculture climate-change land-use-change
Added: 2 months ago - Last Synced: 2 months ago - Created: March 13, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 69
  • Committers: 2
  • Issues: 1
  • Pull Requests: 0
  • Owner: colmduff
  • Stars: 0
  • Forks: 2
  • Packages: 0
https://github.com/epiverse-trace/simulist

simulist: An R package to simulate disease outbreak line list and contacts data - Published in JOSS (2026)
epidemiology epiverse linelist outbreaks r r-package
Added: 3 months ago - Last Synced: 3 months ago - Created: August 30, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits:
  • Committers:
  • Issues: 61
  • Pull Requests: 259
https://github.com/dahyannaraya/copernicus-seasonal-forecast-tools

Copernicus Seasonal Forecast Tools Package: Bridging Seasonal Climate Predictions and Impact Models for Operational Risk Assessment - Published in JOSS (2026)
c3s c3s-seasonal-forecast cds cds-api climada climate-adaptation climate-hazard-modeling copernicus copernicus-api copernicus-climate-change-service copernicus-climate-data-store dwd hazard-modeling open-source python seasonal-forecast
Added: 3 months ago - Last Synced: 3 months ago - Created: May 06, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 97
  • Committers: 3
  • Issues: 6
  • Pull Requests: 5
  • Owner: DahyannAraya
  • Stars: 2
  • Forks: 2
  • Packages: 1
  • Downloads: 31
https://github.com/gcol33/corrselect

corrselect: Fast and flexible predictor pruning for data analysis and modeling - Published in JOSS (2026)
correlation cran enumeration feature-selection- glm graph-algorithms machine-learning mixed-models multicollinearity r r-package regression rstats statistics variable-selection vif
Added: 3 months ago - Last Synced: 3 months ago - Created: August 05, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits:
  • Committers:
  • Issues: 4
  • Pull Requests: 3
  • Owner: gcol33
  • Stars: 1
  • Forks: 1
  • Packages: 0
https://github.com/haoboatlab/HydrOptics.jl

HydrOptics.jl: A Julia package for calculating irradiance in the water body using Monte Carlo simulations - Published in JOSS (2026)
julia oceanography optics wave
Added: 3 months ago - Last Synced: 3 months ago - Created: July 09, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits:
  • Committers:
  • Issues: 1
  • Pull Requests: 1
https://github.com/ptsolvers/justrelax.jl

JustRelax.jl: A Julia package for geodynamic modeling with matrix-free solvers - Published in JOSS (2026)
cuda geodynamics hpc julialang parallel
Added: 4 months ago - Last Synced: 4 months ago - Created: September 01, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 804
  • Committers: 18
  • Issues: 13
  • Pull Requests: 404
  • Owner: PTsolvers
  • Stars: 33
  • Forks: 10
  • Packages: 1
https://github.com/rikenbit/onlinenmf.jl

OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization - Published in JOSS (2026)
bioinformatics dimensionality-reduction julia nmf out-of-core-processing sparse-matrix
Added: 4 months ago - Last Synced: 4 months ago - Created: February 15, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 51
  • Committers: 4
  • Issues: 3
  • Pull Requests: 17
  • Owner: rikenbit
  • Stars: 2
  • Forks: 1
  • Packages: 1
https://github.com/rikenbit/onlinepca.jl

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)
bioinformatics dimensionality-reduction julia out-of-core-processing pca sparse-matrix
Added: 4 months ago - Last Synced: 4 months ago - Created: March 15, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 296
  • Committers: 5
  • Issues: 3
  • Pull Requests: 15
  • Owner: rikenbit
  • Stars: 24
  • Forks: 3
  • Packages: 1
https://github.com/maxall41/rustsasa

RustSASA: A Rust Crate for Accelerated Solvent Accessible Surface Area Calculations - Published in JOSS (2026)
bioinformatics biology rust
Added: 5 months ago - Last Synced: 5 months ago - Created: February 09, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Rust
  • Commits: 287
  • Committers: 5
  • Issues: 4
  • Pull Requests: 25
  • Owner: maxall41
  • Stars: 16
  • Forks: 6
  • Packages: 1
  • Downloads: 13,187
https://github.com/sustainableaviation/jetfuelburn

JetFuelBurn: A Python package for calculating fuel burn of commercial aircraft - Published in JOSS (2026)
aviation fuel lca
Added: 5 months ago - Last Synced: 5 months ago - Created: February 12, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 161
  • Committers: 2
  • Issues: 21
  • Pull Requests: 5
https://github.com/shakedzy/dython

dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
analysis correlation data modeling plot python roc
Added: 6 months ago - Last Synced: 6 months ago - Created: February 04, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 555
  • Committers: 19
  • Issues: 75
  • Pull Requests: 52
  • Owner: shakedzy
  • Stars: 508
  • Forks: 102
  • Packages: 9
  • Downloads: 68,403
https://github.com/cnes/lenapy

Lenapy: Enhancing xarray for multidimensional geophysical data analysis - Published in JOSS (2025)
geophysics gravity oceanography python xarray
Added: 6 months ago - Last Synced: 6 months ago - Created: April 22, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 0
  • Pull Requests: 4
  • Owner: CNES
  • Stars: 6
  • Forks: 3
  • Packages: 0
https://github.com/imperialcollegelondon/rojak

rojak: A Python library and tool for aviation turbulence diagnostics - Published in JOSS (2025)
aerospace-engineering aviation clear-air-turbulence climate-change library turbulence
Added: 6 months ago - Last Synced: 6 months ago - Created: May 02, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 816
  • Committers: 2
  • Issues: 1
  • Pull Requests: 77
https://github.com/hwo-yield-visualizations/yieldplotlib

yieldplotlib: A unified library for exoplanet yield code visualizations - Published in JOSS (2025)
exoplanets matplotlib visualizations
Added: 6 months ago - Last Synced: 6 months ago - Created: June 05, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 20
  • Pull Requests: 82
http://github.com/cdjellen/ndbc-api

ndbc-api: Accelerating oceanography and climate science research with Python - Published in JOSS (2024)
api climate noaa ocean python
Added: 7 months ago - Last Synced: 7 months ago - Created: May 25, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 198
  • Committers: 5
  • Issues: 13
  • Pull Requests: 71
  • Owner: CDJellen
  • Stars: 24
  • Forks: 5
  • Packages: 0
https://github.com/juliasilge/tidytext

tidytext: Text Mining and Analysis Using Tidy Data Principles in R - Published in JOSS (2016)
natural-language-processing r text-mining tidy-data tidyverse
Added: 7 months ago - Last Synced: 7 months ago - Created: March 31, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 716
  • Committers: 33
  • Issues: 93
  • Pull Requests: 21
  • Owner: juliasilge
  • Stars: 1196
  • Forks: 182
  • Packages: 3
  • Downloads: 68,363
https://github.com/zoran-cuckovic/qgis-visibility-analysis

Advanced viewshed analysis: a Quantum GIS plug-in for the analysis of visual landscapes - Published in JOSS (2016)
qgis qgis2-python-plugins qgis3-plugin visibility-analysis
Added: 7 months ago - Last Synced: 7 months ago - Created: February 08, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 211
  • Committers: 9
  • Issues: 77
  • Pull Requests: 9
https://github.com/bihealth/vcfpy

VCFPy: a Python 3 library with good support for both reading and writing VCF - Published in JOSS (2016)
bioinformatics file-format parsing vcf writing
Added: 7 months ago - Last Synced: 7 months ago - Created: September 15, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 223
  • Committers: 8
  • Issues: 40
  • Pull Requests: 120
  • Owner: bihealth
  • Stars: 109
  • Forks: 23
  • Packages: 1
  • Downloads: 26,176
https://github.com/vida-nyu/reprozip

ReproZip: The Reproducibility Packer - Published in JOSS (2016)
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Added: 7 months ago - Last Synced: 7 months ago - Created: May 06, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2181
  • Committers: 16
  • Issues: 57
  • Pull Requests: 50
  • Owner: VIDA-NYU
  • Stars: 348
  • Forks: 36
  • Packages: 13
  • Downloads: 2,971
https://github.com/mlr-org/batchtools

batchtools: Tools for R to work on batch systems - Published in JOSS (2017)
batchexperiments batchjobs cran docker-swarm high-performance-computing hpc hpc-clusters lsf openlava parallel-computing r reproducibility sge slurm torque
Added: 7 months ago - Last Synced: 7 months ago - Created: October 26, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 935
  • Committers: 18
  • Issues: 84
  • Pull Requests: 35
  • Owner: mlr-org
  • Stars: 183
  • Forks: 52
  • Packages: 1
  • Downloads: 10,816
https://github.com/BioPandas/biopandas

BioPandas: Working with molecular structures in pandas DataFrames - Published in JOSS (2017)
bioinformatics computational-biology drug-discovery mol2 molecular-structures molecule molecules pandas-dataframe pdb pdb-files protein-structure
Added: 7 months ago - Last Synced: 7 months ago - Created: November 21, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 288
  • Committers: 17
  • Issues: 45
  • Pull Requests: 80
  • Owner: BioPandas
  • Stars: 739
  • Forks: 117
  • Packages: 3
https://github.com/dib-lab/khmer

khmer release v2.1: software for biological sequence analysis - Published in JOSS (2017)
bioinformatics bloom-filter count-min-sketch dna graph-traversal k-mer python
Added: 7 months ago - Last Synced: 7 months ago - Created: May 15, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5159
  • Committers: 87
  • Issues: 70
  • Pull Requests: 48
  • Owner: dib-lab
  • Stars: 782
  • Forks: 297
  • Packages: 2
  • Downloads: 3,383
https://github.com/ropensci/visdat

visdat: Visualising Whole Data Frames - Published in JOSS (2017)
exploratory-data-analysis missingness peer-reviewed r r-package ropensci rstats visualisation
Added: 7 months ago - Last Synced: 7 months ago - Created: January 28, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 476
  • Committers: 19
  • Issues: 80
  • Pull Requests: 27
  • Owner: ropensci
  • Stars: 459
  • Forks: 46
  • Packages: 3
  • Downloads: 33,967
https://github.com/sequana/sequana

'Sequana': a Set of Snakemake NGS pipelines - Published in JOSS (2017)
coverage de-novo ngs pacbio rna-seq sequanix snakemake taxonomy variant-calling
Added: 7 months ago - Last Synced: 7 months ago - Created: March 07, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 5816
  • Committers: 10
  • Issues: 54
  • Pull Requests: 139
  • Owner: sequana
  • Stars: 148
  • Forks: 28
  • Packages: 1
  • Downloads: 864
https://github.com/adrn/schwimmbad

schwimmbad: A uniform interface to parallel processing pools in Python - Published in JOSS (2017)
mpi multiprocessing parallel-computing
Added: 7 months ago - Last Synced: 7 months ago - Created: September 05, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 194
  • Committers: 9
  • Issues: 33
  • Pull Requests: 50
  • Owner: adrn
  • Stars: 120
  • Forks: 19
  • Packages: 2
  • Downloads: 26,286
https://github.com/go-hep/hep

Go-HEP: libraries for High Energy Physics analyses in Go - Published in JOSS (2017)
cern cern-analysis go go-hep godoc golang hep hepmc lhc physics-analyses plot plotting root-cern statistics xrootd
Added: 7 months ago - Last Synced: 7 months ago - Created: February 07, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Go
  • Commits: 2799
  • Committers: 18
  • Issues: 55
  • Pull Requests: 154
  • Owner: go-hep
  • Stars: 253
  • Forks: 38
  • Packages: 1
https://github.com/arfc/moltres

Moltres: finite element based simulation of molten salt reactors - Published in JOSS (2018)
fem finite-elements molten-salt-reactors moose multi-physics object-oriented parallel software
Added: 7 months ago - Last Synced: 7 months ago - Created: August 18, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 1101
  • Committers: 29
  • Issues: 60
  • Pull Requests: 141
  • Owner: arfc
  • Stars: 74
  • Forks: 43
  • Packages: 0
https://github.com/ljvmiranda921/pyswarms

PySwarms: a research toolkit for Particle Swarm Optimization in Python - Published in JOSS (2018)
algorithm discrete-optimization global-optimization machine-learning metaheuristics optimization optimization-algorithms optimization-tools particle-swarm-optimization pso swarm-intelligence
Added: 7 months ago - Last Synced: 7 months ago - Created: July 12, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 364
  • Committers: 44
  • Issues: 90
  • Pull Requests: 39
  • Owner: ljvmiranda921
  • Stars: 1364
  • Forks: 339
  • Packages: 16
  • Downloads: 71,898
https://github.com/expfactory/expfactory

The Experiment Factory: Reproducible Experiment Containers - Published in JOSS (2018)
battery container experiment-factory experiments expfactory psychology reproducible singularity
Added: 7 months ago - Last Synced: 7 months ago - Created: October 28, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 517
  • Committers: 4
  • Issues: 59
  • Pull Requests: 48
  • Owner: expfactory
  • Stars: 39
  • Forks: 14
  • Packages: 1
  • Downloads: 1,264
https://github.com/piermorel/gramm

Gramm: grammar of graphics plotting in Matlab - Published in JOSS (2018)
data-visualization matlab plot statistics stats visualization
Added: 7 months ago - Last Synced: 7 months ago - Created: December 10, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 218
  • Committers: 13
  • Issues: 98
  • Pull Requests: 30
  • Owner: piermorel
  • Stars: 802
  • Forks: 221
  • Packages: 1
https://github.com/ropensci/usaboundaries

USAboundaries: Historical and Contemporary Boundaries of the United States of America - Published in JOSS (2018)
digital-history history r r-package rstats spatial-data
Added: 7 months ago - Last Synced: 7 months ago - Created: October 09, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 216
  • Committers: 8
  • Issues: 44
  • Pull Requests: 8
  • Owner: ropensci
  • Stars: 64
  • Forks: 10
  • Packages: 3
https://github.com/julianlsolvers/optim.jl

Optim: A mathematical optimization package for Julia - Published in JOSS (2018)
julia optim optimisation optimization unconstrained-optimisation unconstrained-optimization
Added: 7 months ago - Last Synced: 7 months ago - Created: April 04, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 893
  • Committers: 125
  • Issues: 141
  • Pull Requests: 171
  • Owner: JuliaNLSolvers
  • Stars: 1178
  • Forks: 234
  • Packages: 3
  • Downloads: 12,357
https://github.com/terrytangyuan/autoplotly

autoplotly: An R package for automatic generation of interactive visualizations for statistical results - Published in JOSS (2018)
data-visualization ggplot2 interactive-visualizations machine-learning plotly plotlyjs rstats statistics
Added: 7 months ago - Last Synced: 7 months ago - Created: January 07, 2018

  • Relevant topics? true
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  • Main Language: R
  • Commits: 62
  • Committers: 2
  • Issues: 5
  • Pull Requests: 2
  • Owner: terrytangyuan
  • Stars: 92
  • Forks: 11
  • Packages: 3
  • Downloads: 779
https://github.com/JuliaEarth/GeoStats.jl

GeoStats.jl -- High-performance geostatistics in Julia - Published in JOSS (2018)
datascience geo geospatial geostatistics gis spatial-statistics statistical-learning statistics
Added: 7 months ago - Last Synced: 7 months ago - Created: April 12, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Main Language: Julia
  • Commits: 274
  • Committers: 6
  • Issues: 141
  • Pull Requests: 349
  • Owner: JuliaEarth
  • Stars: 566
  • Forks: 66
  • Packages: 3
  • Downloads: 454
https://github.com/sepandhaghighi/pycm

PyCM: Multiclass confusion matrix library in Python - Published in JOSS (2018)
accuracy ai artificial-intelligence classification confusion-matrix data data-analysis data-mining data-science deep-learning deeplearning evaluation machine-learning mathematics matrix ml multiclass-classification neural-network statistical-analysis statistics
Added: 7 months ago - Last Synced: 7 months ago - Created: January 22, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 2864
  • Committers: 18
  • Issues: 42
  • Pull Requests: 230
  • Owner: sepandhaghighi
  • Stars: 1489
  • Forks: 125
  • Packages: 2
  • Downloads: 183,271
https://github.com/strengejacke/sjmisc

sjmisc: Data and Variable Transformation Functions - Published in JOSS (2018)
data-transformation data-wrangling labelled-data r recoding
Added: 7 months ago - Last Synced: 7 months ago - Created: March 21, 2015

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: R
  • Commits: 929
  • Committers: 13
  • Issues: 84
  • Pull Requests: 18
  • Owner: strengejacke
  • Stars: 161
  • Forks: 24
  • Packages: 2
  • Downloads: 46,244
https://github.com/ellessenne/rsimsum

rsimsum: Summarise results from Monte Carlo simulation studies - Published in JOSS (2018)
biostatistics monte-carlo-error r rstats simulation simulation-study simulations statistics
Added: 7 months ago - Last Synced: 7 months ago - Created: May 25, 2017

  • Relevant topics? true
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  • Main Language: R
  • Commits: 606
  • Committers: 7
  • Issues: 42
  • Pull Requests: 17
  • Owner: ellessenne
  • Stars: 30
  • Forks: 7
  • Packages: 1
  • Downloads: 610
https://github.com/strengejacke/ggeffects

ggeffects: Tidy Data Frames of Marginal Effects from Regression Models - Published in JOSS (2018)
estimated-marginal-means hacktoberfest marginal-effects prediction
Added: 7 months ago - Last Synced: 7 months ago - Created: June 01, 2017

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  • Open source license? true
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  • Main Language: R
  • Commits: 1942
  • Committers: 13
  • Issues: 200
  • Pull Requests: 362
  • Owner: strengejacke
  • Stars: 602
  • Forks: 40
  • Packages: 2
  • Downloads: 51,141
https://github.com/Frost-group/PolaronMobility.jl

PolaronMobility.jl: Implementation of the Feynman variational polaron model - Published in JOSS (2018)
mobility path-integral physics polarons solid-state
Added: 7 months ago - Last Synced: 7 months ago - Created: April 03, 2017

  • Relevant topics? true
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  • Open source license? true
  • Active? true
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  • Main Language: Jupyter Notebook
  • Commits: 498
  • Committers: 2
  • Issues: 15
  • Pull Requests: 7
https://github.com/raamana/graynet

graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
anatomical-mri cortical-network cortical-thickness feature-extraction freesurfer graph gray-matter machine-learning mindboggle network-analysis neuroimaging neuroscience structural-mri thickness vbm voxel-based
Added: 7 months ago - Last Synced: 7 months ago - Created: July 27, 2017

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  • Open source license? true
  • Active? true
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  • Main Language: Jupyter Notebook
  • Commits: 297
  • Committers: 3
  • Issues: 25
  • Pull Requests: 39
  • Owner: raamana
  • Stars: 38
  • Forks: 8
  • Packages: 1
  • Downloads: 102
https://github.com/benjamin-lee/codonadaptationindex

Python Implementation of Codon Adaptation Index - Published in JOSS (2018)
bioinformatics codons genetics
Added: 7 months ago - Last Synced: 7 months ago - Created: August 14, 2017

  • Relevant topics? true
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  • Open source license? true
  • Active? true
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  • Main Language: Jupyter Notebook
  • Commits: 111
  • Committers: 3
  • Issues: 11
  • Pull Requests: 6
  • Owner: Benjamin-Lee
  • Stars: 37
  • Forks: 11
  • Packages: 1
  • Downloads: 258
https://github.com/fatiando/verde

Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)
earth-science fatiando-a-terra geophysics geoscience geospatial interpolation machine-learning python python3 scipy scipy-stack
Added: 7 months ago - Last Synced: 7 months ago - Created: April 25, 2018

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  • Main Language: Python
  • Commits: 337
  • Committers: 15
  • Issues: 61
  • Pull Requests: 218
  • Owner: fatiando
  • Stars: 642
  • Forks: 74
  • Packages: 3
  • Downloads: 9,768
https://github.com/kpeeters/cadabra2

Cadabra2: computer algebra for field theory revisited - Published in JOSS (2018)
cadabra2 computer-algebra computer-algebra-system cplusplus mathematics physics python3 science-research symbolic-manipulation sympy tensor-algebra tensors
Added: 7 months ago - Last Synced: 7 months ago - Created: November 03, 2015

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  • Main Language: C++
  • Commits: 3709
  • Committers: 18
  • Issues: 182
  • Pull Requests: 41
  • Owner: kpeeters
  • Stars: 257
  • Forks: 43
  • Packages: 3
https://github.com/arviz-devs/arviz

ArviZ a unified library for exploratory analysis of Bayesian models in Python - Published in JOSS (2019)
bayesian closember python
Added: 7 months ago - Last Synced: 7 months ago - Created: July 29, 2015

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1562
  • Committers: 183
  • Issues: 161
  • Pull Requests: 293
  • Owner: arviz-devs
  • Stars: 1737
  • Forks: 458
  • Packages: 5
  • Downloads: 3,572,304
https://github.com/python-hydro/pyro2

pyro: a framework for hydrodynamics explorations and prototyping - Published in JOSS (2019)
advection astrophysical-simulation finite-volume finite-volume-methods hydrodynamics multigrid pde pyro python simulation solver
Added: 7 months ago - Last Synced: 7 months ago - Created: June 06, 2014

  • Relevant topics? true
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  • Main Language: Jupyter Notebook
  • Commits: 1649
  • Committers: 18
  • Issues: 41
  • Pull Requests: 361
  • Owner: python-hydro
  • Stars: 327
  • Forks: 129
  • Packages: 1
  • Downloads: 130
https://github.com/climateequityreferenceproject/cerc-web

The Climate Equity Reference Calculator - Published in JOSS (2019)
climate-change climate-justice effort-sharing equity-calculator unfccc
Added: 7 months ago - Last Synced: 7 months ago - Created: October 03, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: PHP
  • Commits: 611
  • Committers: 4
  • Issues: 2
  • Pull Requests: 5
https://github.com/pmeal/porespy

PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images - Published in JOSS (2019)
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Added: 7 months ago - Last Synced: 7 months ago - Created: May 06, 2015

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 3761
  • Committers: 42
  • Issues: 181
  • Pull Requests: 221
  • Owner: PMEAL
  • Stars: 371
  • Forks: 110
  • Packages: 2
  • Downloads: 6,981
https://github.com/brandondube/prysm

prysm: A Python optics module - Published in JOSS (2019)
4d diffraction forbes-polynomial gpu-computing modeling mtf mtf-mapper optics phase-retrieval phasecam propagation psf python q-polynomial raytracing trioptics wavefront wavefront-sensing zernike zygo
Added: 7 months ago - Last Synced: 7 months ago - Created: February 13, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1607
  • Committers: 12
  • Issues: 91
  • Pull Requests: 13
  • Owner: brandondube
  • Stars: 315
  • Forks: 53
  • Packages: 1
  • Downloads: 914
https://github.com/amrex-codes/amrex

AMReX: a framework for block-structured adaptive mesh refinement - Published in JOSS (2019)
adaptive-mesh-refinement amr amrex high-performance-computing hpsf scientific-computing
Added: 7 months ago - Last Synced: 7 months ago - Created: April 28, 2017

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  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 24283
  • Committers: 239
  • Issues: 271
  • Pull Requests: 893
https://github.com/tqdm/tqdm

tqdm: A Fast, Extensible Progress Meter for Python and CLI - Published in JOSS (2019)
cli closember console discord gui jupyter keras meter pandas parallel progress progress-bar progressbar progressmeter python rate telegram terminal time utilities
Added: 7 months ago - Last Synced: 7 months ago - Created: June 03, 2015

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1726
  • Committers: 117
  • Issues: 235
  • Pull Requests: 226
  • Owner: tqdm
  • Stars: 30563
  • Forks: 1401
  • Packages: 4
  • Downloads: 106,596
https://github.com/pyvista/pyvista

PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)
3d fem finite-element-analysis finite-elements hacktoberfest mesh mesh-processing meshviewer open-science plotting python scientific-research scientific-visualization visualization vtk
Added: 7 months ago - Last Synced: 7 months ago - Created: May 31, 2017

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5362
  • Committers: 187
  • Issues: 752
  • Pull Requests: 3680
  • Owner: pyvista
  • Stars: 3328
  • Forks: 595
  • Packages: 4
  • Downloads: 881,583
https://github.com/magneticparticleimaging/mpifiles.jl

MPIFiles.jl: A Julia Package for Magnetic Particle Imaging Files - Published in JOSS (2019)
julia mpi
Added: 7 months ago - Last Synced: 7 months ago - Created: May 21, 2017

  • Relevant topics? true
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  • Main Language: Julia
  • Commits: 898
  • Committers: 24
  • Issues: 47
  • Pull Requests: 135
https://github.com/opengeovis/pvgeo

PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
3d data-visualization geophysics geosciences model-building open-science paraview paraview-plugin python visual-data-integration visualization vtk
Added: 7 months ago - Last Synced: 7 months ago - Created: July 18, 2017

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 1730
  • Committers: 7
  • Issues: 46
  • Pull Requests: 64
  • Owner: OpenGeoVis
  • Stars: 227
  • Forks: 43
  • Packages: 3
  • Downloads: 2,414
https://github.com/xoolive/traffic

traffic, a toolbox for processing and analysing air traffic data - Published in JOSS (2019)
adsb air-traffic-data data-analytics data-science data-visualisation declarative-pipeline mode-s trajectory
Added: 7 months ago - Last Synced: 7 months ago - Created: March 27, 2018

  • Relevant topics? true
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  • Fork? false
  • Main Language: Python
  • Commits: 1540
  • Committers: 38
  • Issues: 38
  • Pull Requests: 287
  • Owner: xoolive
  • Stars: 440
  • Forks: 86
  • Packages: 2
  • Downloads: 6,321
https://github.com/uscbiostats/slurmr

slurmR: A lightweight wrapper for HPC with Slurm - Published in JOSS (2021)
bioinformatics hpc rpackage rstats slurm
Added: 7 months ago - Last Synced: 7 months ago - Created: August 24, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: R
  • Commits: 275
  • Committers: 3
  • Issues: 42
  • Pull Requests: 6
  • Owner: USCbiostats
  • Stars: 60
  • Forks: 11
  • Packages: 1
  • Downloads: 575
https://github.com/emsig/emg3d

emg3d: A multigrid solver for 3D electromagnetic diffusion - Published in JOSS (2019)
csem electromagnetic geophysics modelling multigrid python
Added: 7 months ago - Last Synced: 7 months ago - Created: April 17, 2019

  • Relevant topics? true
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  • Open source license? true
  • Active? true
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  • Main Language: Python
  • Commits: 346
  • Committers: 2
  • Issues: 31
  • Pull Requests: 112
  • Owner: emsig
  • Stars: 70
  • Forks: 8
  • Packages: 2
  • Downloads: 496
https://github.com/bihealth/altamisa

AltamISA: a Python API for ISA-Tab files - Published in JOSS (2019)
bioinformatics isa isa-tab
Added: 7 months ago - Last Synced: 7 months ago - Created: February 22, 2018

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 147
  • Committers: 8
  • Issues: 52
  • Pull Requests: 118
  • Owner: bihealth
  • Stars: 5
  • Forks: 2
  • Packages: 1
  • Downloads: 1,496
https://github.com/jlustigy/coronagraph

coronagraph: Telescope Noise Modeling for Exoplanets in Python - Published in JOSS (2019)
astronomy coronagraph exoplanets spectroscopy
Added: 7 months ago - Last Synced: 7 months ago - Created: January 29, 2016

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 239
  • Committers: 3
  • Issues: 6
  • Pull Requests: 4
  • Owner: jlustigy
  • Stars: 6
  • Forks: 8
  • Packages: 1
  • Downloads: 334
https://github.com/zfit/phasespace

phasespace: n-body phase space generation in Python - Published in JOSS (2019)
hep physics-simulation
Added: 7 months ago - Last Synced: 7 months ago - Created: February 27, 2019

  • Relevant topics? true
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  • Fork? false
  • Main Language: Python
  • Commits: 588
  • Committers: 11
  • Issues: 25
  • Pull Requests: 123
  • Owner: zfit
  • Stars: 24
  • Forks: 10
  • Packages: 2
  • Downloads: 1,079
https://github.com/earthlab/earthpy

EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools. - Published in JOSS (2019)
education python raster spatial-data vector
Added: 7 months ago - Last Synced: 7 months ago - Created: February 20, 2018

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 947
  • Committers: 38
  • Issues: 11
  • Pull Requests: 176
  • Owner: earthlab
  • Stars: 529
  • Forks: 162
  • Packages: 3
  • Downloads: 17,184
https://github.com/paudetseis/telewavesim

Telewavesim: Python software for teleseismic body wave modeling - Published in JOSS (2019)
anisotropy fortran geophysics modeling obs plane-waves python receiver-functions seismology sks
Added: 7 months ago - Last Synced: 7 months ago - Created: August 26, 2019

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Jupyter Notebook
  • Commits: 236
  • Committers: 3
  • Issues: 25
  • Pull Requests: 27
  • Owner: paudetseis
  • Stars: 78
  • Forks: 19
  • Packages: 1
  • Downloads: 58
https://github.com/ropensci/opentripplanner

OpenTripPlanner for R - Published in JOSS (2019)
data isochrones java opentripplanner otp public-transport r routing transport transportation-planning
Added: 7 months ago - Last Synced: 7 months ago - Created: October 19, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: R
  • Commits: 603
  • Committers: 11
  • Issues: 81
  • Pull Requests: 38
  • Owner: ropensci
  • Stars: 86
  • Forks: 21
  • Packages: 1
  • Downloads: 1,488
https://github.com/ytree-project/ytree

ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
analysis astronomy astrophysics data merger-trees python simulations trees
Added: 7 months ago - Last Synced: 7 months ago - Created: July 27, 2017

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 1448
  • Committers: 6
  • Issues: 24
  • Pull Requests: 127
  • Owner: ytree-project
  • Stars: 16
  • Forks: 10
  • Packages: 2
  • Downloads: 368
https://github.com/amrex-astro/maestroex

MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver - Published in JOSS (2019)
amrex astrophysical-simulation
Added: 7 months ago - Last Synced: 7 months ago - Created: September 18, 2017

  • Relevant topics? true
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  • Main Language: C++
  • Commits: 2235
  • Committers: 28
  • Issues: 22
  • Pull Requests: 145
https://github.com/larq/larq

Larq: An Open-Source Library for Training Binarized Neural Networks - Published in JOSS (2020)
binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow
Added: 7 months ago - Last Synced: 7 months ago - Created: March 18, 2019

  • Relevant topics? true
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  • Fork? false
  • Main Language: Python
  • Commits: 735
  • Committers: 18
  • Issues: 46
  • Pull Requests: 180
  • Owner: larq
  • Stars: 718
  • Forks: 85
  • Packages: 1
  • Downloads: 2,574
https://github.com/oschwengers/referenceseeker

ReferenceSeeker: rapid determination of appropriate reference genomes - Published in JOSS (2020)
ani bioinformatics mash microbiology reference-genomes refseq wgs
Added: 7 months ago - Last Synced: 7 months ago - Created: November 01, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 222
  • Committers: 1
  • Issues: 27
  • Pull Requests: 4
  • Owner: oschwengers
  • Stars: 97
  • Forks: 6
  • Packages: 1
  • Downloads: 32
https://github.com/ropensci/osfr

osfr: An R Interface to the Open Science Framework - Published in JOSS (2020)
open-science osf reproducible-research
Added: 7 months ago - Last Synced: 7 months ago - Created: September 11, 2015

  • Relevant topics? true
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  • Main Language: R
  • Commits: 1003
  • Committers: 18
  • Issues: 69
  • Pull Requests: 37
  • Owner: ropensci
  • Stars: 151
  • Forks: 30
  • Packages: 2
  • Downloads: 2,104
https://github.com/artivis/manif

Manif: A micro Lie theory library for state estimation in robotics applications - Published in JOSS (2020)
2d 3d c-plus-plus computer-vision cpp11 geometry header-only lie-groups lie-theory python3 robotics slam state-estimation
Added: 7 months ago - Last Synced: 7 months ago - Created: April 16, 2018

  • Relevant topics? true
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  • Main Language: C++
  • Commits: 691
  • Committers: 14
  • Issues: 80
  • Pull Requests: 101
  • Owner: artivis
  • Stars: 1678
  • Forks: 261
  • Packages: 2
https://github.com/pachadotdev/economiccomplexity

Economiccomplexity: Computational Methods for Economic Complexity - Published in JOSS (2020)
economic-complexity eigenvalues eigenvectors graphs international-trade matrix networks r recursive-algorithm
Added: 7 months ago - Last Synced: 7 months ago - Created: February 20, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: HTML
  • Commits: 135
  • Committers: 7
  • Issues: 20
  • Pull Requests: 3
https://github.com/NeuroDiffGym/neurodiffeq

NeuroDiffEq: A Python package for solving differential equations with neural networks - Published in JOSS (2020)
artificial-intelligence boundary-value-problem deep-learning differential-equations initial-value-problem mathematical-modelling neural-networks ode odes pde-solver physics-informed-neural-networks pinn pypi pytorch scientific-computing time-series
Added: 7 months ago - Last Synced: 7 months ago - Created: March 28, 2019

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 1112
  • Committers: 22
  • Issues: 51
  • Pull Requests: 72
  • Owner: NeuroDiffGym
  • Stars: 766
  • Forks: 99
  • Packages: 1
  • Downloads: 394
https://github.com/underworldcode/underworld2

Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud - Published in JOSS (2020)
auscope docker finite-element-methods geodynamics hacktoberfest hacktoberfest2020 hacktoberfest2021 particle-in-cell petsc python underworld
Added: 7 months ago - Last Synced: 7 months ago - Created: September 28, 2015

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: C
  • Commits: 1967
  • Committers: 34
  • Issues: 135
  • Pull Requests: 53
  • Owner: underworldcode
  • Stars: 197
  • Forks: 64
  • Packages: 2
  • Downloads: 152
https://github.com/telatin/covtobed

covtobed: a simple and fast tool to extract coverage tracks from BAM files - Published in JOSS (2020)
alignments bam-files bed bioconda bioinformatics bioinformatics-tool sequence-coverage
Added: 7 months ago - Last Synced: 7 months ago - Created: December 09, 2019

  • Relevant topics? true
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  • Main Language: Makefile
  • Commits: 289
  • Committers: 2
  • Issues: 13
  • Pull Requests: 2
  • Owner: telatin
  • Stars: 44
  • Forks: 3
  • Packages: 0
https://github.com/babinyurii/recan

Recan: Python tool for analysis of recombination events in viral genomes - Published in JOSS (2020)
alignment bioinformatics distance-plots dna-recombination genetic-distances python recombination-events virology
Added: 7 months ago - Last Synced: 7 months ago - Created: May 30, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 285
  • Committers: 3
  • Issues: 15
  • Pull Requests: 5
  • Owner: babinyurii
  • Stars: 10
  • Forks: 7
  • Packages: 1
  • Downloads: 36
https://github.com/samuelduchesne/archetypal

archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)
archetypes buildings energy-simulation energyplus energyplus-models python simulation-templates umi umi-template visualization
Added: 7 months ago - Last Synced: 7 months ago - Created: October 17, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 2626
  • Committers: 7
  • Issues: 14
  • Pull Requests: 168
  • Owner: samuelduchesne
  • Stars: 17
  • Forks: 9
  • Packages: 1
  • Downloads: 1,866
https://github.com/sap218/jabberwocky

Jabberwocky: an ontology-aware toolkit for manipulating text - Published in JOSS (2020)
annotation grep jabberwocky ontology plotting python synonyms text-mining textual-data tfidf
Added: 7 months ago - Last Synced: 7 months ago - Created: December 12, 2019

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 123
  • Committers: 3
  • Issues: 13
  • Pull Requests: 7
  • Owner: sap218
  • Stars: 16
  • Forks: 1
  • Packages: 1
https://github.com/gee-community/geemap

geemap: A Python package for interactive mapping with Google Earth Engine - Published in JOSS (2020)
colab data-science dataviz earth-engine earthengine folium geospatial gis google-earth-engine image-processing ipyleaflet ipywidgets jupyter jupyter-notebook landsat mapping python remote-sensing streamlit streamlit-webapp
Added: 7 months ago - Last Synced: 7 months ago - Created: March 08, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1675
  • Committers: 61
  • Issues: 245
  • Pull Requests: 544
  • Owner: gee-community
  • Stars: 3768
  • Forks: 1124
  • Packages: 4
  • Downloads: 69,328
https://github.com/rgerum/pylustrator

pylustrator: code generation for reproducible figures for publication - Published in JOSS (2020)
code-generation gui interactive matplotlib visualisation
Added: 7 months ago - Last Synced: 7 months ago - Created: June 21, 2018

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 497
  • Committers: 9
  • Issues: 58
  • Pull Requests: 19
  • Owner: rgerum
  • Stars: 881
  • Forks: 41
  • Packages: 2
  • Downloads: 502
https://github.com/csdms/bmi

The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences - Published in JOSS (2020)
bmi c csdms cxx fortran geosciences interface java javascript julia numerical-modeling python
Added: 7 months ago - Last Synced: 7 months ago - Created: June 05, 2014

  • Relevant topics? true
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  • Main Language: TeX
  • Commits: 343
  • Committers: 14
  • Issues: 52
  • Pull Requests: 123
  • Owner: csdms
  • Stars: 54
  • Forks: 18
  • Packages: 0
https://github.com/keurfonluu/toughio

toughio: Pre- and post-processing Python library for TOUGH - Published in JOSS (2020)
io postprocessing preprocessing tough2 tough3
Added: 7 months ago - Last Synced: 7 months ago - Created: July 22, 2019

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1338
  • Committers: 1
  • Issues: 53
  • Pull Requests: 85
  • Owner: keurfonluu
  • Stars: 66
  • Forks: 9
  • Packages: 1
  • Downloads: 572
https://github.com/swiftsim/swiftsimio

swiftsimio: A Python library for reading SWIFT data - Published in JOSS (2020)
astrophysics cosmology hdf5 particle simulation sph
Added: 7 months ago - Last Synced: 7 months ago - Created: March 11, 2019

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 842
  • Committers: 22
  • Issues: 92
  • Pull Requests: 163
  • Owner: SWIFTSIM
  • Stars: 26
  • Forks: 14
  • Packages: 1
  • Downloads: 7,061
https://github.com/stemangiola/tidyheatmap

tidyHeatmap: an R package for modular heatmap production based on tidy principles - Published in JOSS (2020)
brewer complexheatmap custom-palette dplyr graphviz heatmap mtcars plotting r rstudio scale tibble tidy tidy-data-frame tidybulk tidyverse viridis
Added: 7 months ago - Last Synced: 7 months ago - Created: January 13, 2020

  • Relevant topics? true
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  • Main Language: R
  • Commits: 460
  • Committers: 10
  • Issues: 56
  • Pull Requests: 95
  • Owner: stemangiola
  • Stars: 347
  • Forks: 25
  • Packages: 3
  • Downloads: 1,422
https://github.com/cicirello/chips-n-salsa

Chips-n-Salsa: A Java Library of Customizable, Hybridizable, Iterative, Parallel, Stochastic, and Self-Adaptive Local Search Algorithms - Published in JOSS (2020)
adaptive discrete-optimization evolutionary-computation genetic-algorithm hbss hill-climbing java local-search metaheuristics multithreading mutation optimization parallel-computing permutations randomized-heuristics scheduling search-algorithm simulated-annealing stochastic-sampling vbss
Added: 7 months ago - Last Synced: 7 months ago - Created: June 17, 2020

  • Relevant topics? true
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  • Main Language: Java
  • Commits: 2002
  • Committers: 4
  • Issues: 54
  • Pull Requests: 315
  • Owner: cicirello
  • Stars: 70
  • Forks: 39
  • Packages: 3
https://github.com/flintproject/flint

Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations - Published in JOSS (2020)
biology cellml ode phml physiology sbml sde simulator
Added: 7 months ago - Last Synced: 7 months ago - Created: March 27, 2015

  • Relevant topics? true
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  • Main Language: C++
  • Commits: 1806
  • Committers: 3
  • Issues: 28
  • Pull Requests: 3
https://github.com/easystats/parameters

Extracting, Computing and Exploring the Parameters of Statistical Models using R - Published in JOSS (2020)
beta bootstrap ci confidence-intervals data-reduction easystats fa feature-extraction feature-reduction hacktoberfest parameters pca pvalues r r-package regression-models robust-statistics standardize standardized-estimates statistical-models
Added: 7 months ago - Last Synced: 7 months ago - Created: February 09, 2019

  • Relevant topics? true
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  • Main Language: R
  • Commits: 4967
  • Committers: 24
  • Issues: 144
  • Pull Requests: 356
  • Owner: easystats
  • Stars: 477
  • Forks: 40
  • Packages: 3
  • Downloads: 109,986
https://github.com/brainglobe/brainglobe-atlasapi

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)
atlases brain microscopy neuroscience python registration visualisation
Added: 7 months ago - Last Synced: 7 months ago - Created: April 30, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 408
  • Committers: 36
  • Issues: 239
  • Pull Requests: 264
  • Owner: brainglobe
  • Stars: 164
  • Forks: 49
  • Packages: 1
  • Downloads: 6,909
https://github.com/jboynyc/textnets

textnets: A Python package for text analysis with networks - Published in JOSS (2020)
computational-social-science network-analysis nlp sociology text-analysis text-as-data visualization
Added: 7 months ago - Last Synced: 7 months ago - Created: December 15, 2017

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 905
  • Committers: 9
  • Issues: 43
  • Pull Requests: 22
  • Owner: jboynyc
  • Stars: 289
  • Forks: 24
  • Packages: 2
  • Downloads: 2,288
https://github.com/amrex-astro/castro

CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code - Published in JOSS (2020)
adaptive-mesh-refinement amr amrex astrophysical-simulation astrophysics castro cfd gravity hydrodynamics pde radiation reactions
Added: 7 months ago - Last Synced: 7 months ago - Created: January 21, 2015

  • Relevant topics? true
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  • Main Language: C++
  • Commits: 9000
  • Committers: 63
  • Issues: 100
  • Pull Requests: 741
https://github.com/juliadynamics/drwatson.jl

DrWatson: the perfect sidekick for your scientific inquiries - Published in JOSS (2020)
hacktoberfest project-assistant project-management science science-research setup-tool simulations
Added: 7 months ago - Last Synced: 7 months ago - Created: January 29, 2019

  • Relevant topics? true
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  • Main Language: Julia
  • Commits: 533
  • Committers: 74
  • Issues: 87
  • Pull Requests: 77
  • Owner: JuliaDynamics
  • Stars: 889
  • Forks: 95
  • Packages: 1
  • Downloads: 954
https://github.com/biosteamdevelopmentgroup/thermosteam

Thermosteam: BioSTEAM's Premier Thermodynamic Engine - Published in JOSS (2020)
chemical chemical-engineering equations-of-state liquid-liquid-equilibrium material-and-energy-balance mixture properties reaction thermodynamics vapor-liquid-equilibrium
Added: 7 months ago - Last Synced: 7 months ago - Created: November 02, 2019

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  • Main Language: Python
  • Commits: 1285
  • Committers: 7
  • Issues: 72
  • Pull Requests: 27
https://github.com/scikit-hep/pyhf

pyhf: pure-Python implementation of HistFactory statistical models - Published in JOSS (2021)
asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python scientific-computations scikit-hep scipy statistical-inference statistics
Added: 7 months ago - Last Synced: 7 months ago - Created: January 24, 2018

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  • Main Language: Python
  • Commits: 1451
  • Committers: 36
  • Issues: 124
  • Pull Requests: 492
  • Owner: scikit-hep
  • Stars: 291
  • Forks: 90
  • Packages: 2
  • Downloads: 1,253,052
https://github.com/dynamicslab/pysensors

PySensors: A Python package for sparse sensor placement - Published in JOSS (2021)
optimization-tools sensor sensor-placement sensors
Added: 7 months ago - Last Synced: 7 months ago - Created: May 01, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 396
  • Committers: 10
  • Issues: 8
  • Pull Requests: 29
  • Owner: dynamicslab
  • Stars: 103
  • Forks: 25
  • Packages: 1
  • Downloads: 1,730