Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/shakedzy/dython

dython: A Set of Analysis and Visualization Tools for Data and Variables in Python - Published in JOSS (2025)
analysis correlation data modeling plot python roc
Added: 12 days ago - Last Synced: 12 days ago - Created: February 04, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 555
  • Committers: 19
  • Issues: 75
  • Pull Requests: 52
  • Owner: shakedzy
  • Stars: 508
  • Forks: 102
  • Packages: 9
  • Downloads: 68,403
https://github.com/cnes/lenapy

Lenapy: Enhancing xarray for multidimensional geophysical data analysis - Published in JOSS (2025)
geophysics gravity oceanography python xarray
Added: 17 days ago - Last Synced: 17 days ago - Created: April 22, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 0
  • Pull Requests: 4
  • Owner: CNES
  • Stars: 6
  • Forks: 3
  • Packages: 0
https://github.com/imperialcollegelondon/rojak

rojak: A Python library and tool for aviation turbulence diagnostics - Published in JOSS (2025)
aerospace-engineering aviation clear-air-turbulence climate-change library turbulence
Added: 17 days ago - Last Synced: 17 days ago - Created: May 02, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 816
  • Committers: 2
  • Issues: 1
  • Pull Requests: 77
https://github.com/mines-oceanography/mantaray

Mantaray: A Rust Package for Ray Tracing Ocean Surface Gravity Waves - Published in JOSS (2025)
oceanography ray-tracing waves
Added: 18 days ago - Last Synced: 18 days ago - Created: May 18, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 133
  • Committers: 8
  • Issues: 13
  • Pull Requests: 26
https://github.com/hwo-yield-visualizations/yieldplotlib

yieldplotlib: A unified library for exoplanet yield code visualizations - Published in JOSS (2025)
exoplanets matplotlib visualizations
Added: 18 days ago - Last Synced: 18 days ago - Created: June 05, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits:
  • Committers:
  • Issues: 20
  • Pull Requests: 82
http://github.com/cdjellen/ndbc-api

ndbc-api: Accelerating oceanography and climate science research with Python - Published in JOSS (2024)
api climate noaa ocean python
Added: 2 months ago - Last Synced: 2 months ago - Created: May 25, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 198
  • Committers: 5
  • Issues: 13
  • Pull Requests: 71
  • Owner: CDJellen
  • Stars: 24
  • Forks: 5
  • Packages: 0
https://github.com/juliasilge/tidytext

tidytext: Text Mining and Analysis Using Tidy Data Principles in R - Published in JOSS (2016)
natural-language-processing r text-mining tidy-data tidyverse
Added: 2 months ago - Last Synced: 2 months ago - Created: March 31, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 716
  • Committers: 33
  • Issues: 93
  • Pull Requests: 21
  • Owner: juliasilge
  • Stars: 1196
  • Forks: 182
  • Packages: 3
  • Downloads: 68,363
https://github.com/zoran-cuckovic/qgis-visibility-analysis

Advanced viewshed analysis: a Quantum GIS plug-in for the analysis of visual landscapes - Published in JOSS (2016)
qgis qgis2-python-plugins qgis3-plugin visibility-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: February 08, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 211
  • Committers: 9
  • Issues: 77
  • Pull Requests: 9
https://github.com/bihealth/vcfpy

VCFPy: a Python 3 library with good support for both reading and writing VCF - Published in JOSS (2016)
bioinformatics file-format parsing vcf writing
Added: 2 months ago - Last Synced: 2 months ago - Created: September 15, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 223
  • Committers: 8
  • Issues: 40
  • Pull Requests: 120
  • Owner: bihealth
  • Stars: 109
  • Forks: 23
  • Packages: 1
  • Downloads: 26,176
https://github.com/vida-nyu/reprozip

ReproZip: The Reproducibility Packer - Published in JOSS (2016)
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Added: 2 months ago - Last Synced: 2 months ago - Created: May 06, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2181
  • Committers: 16
  • Issues: 57
  • Pull Requests: 50
  • Owner: VIDA-NYU
  • Stars: 348
  • Forks: 36
  • Packages: 13
  • Downloads: 2,971
https://github.com/mlr-org/batchtools

batchtools: Tools for R to work on batch systems - Published in JOSS (2017)
batchexperiments batchjobs cran docker-swarm high-performance-computing hpc hpc-clusters lsf openlava parallel-computing r reproducibility sge slurm torque
Added: 2 months ago - Last Synced: 2 months ago - Created: October 26, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 935
  • Committers: 18
  • Issues: 84
  • Pull Requests: 35
  • Owner: mlr-org
  • Stars: 183
  • Forks: 52
  • Packages: 1
  • Downloads: 10,816
https://github.com/BioPandas/biopandas

BioPandas: Working with molecular structures in pandas DataFrames - Published in JOSS (2017)
bioinformatics computational-biology drug-discovery mol2 molecular-structures molecule molecules pandas-dataframe pdb pdb-files protein-structure
Added: 2 months ago - Last Synced: 2 months ago - Created: November 21, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 288
  • Committers: 17
  • Issues: 45
  • Pull Requests: 80
  • Owner: BioPandas
  • Stars: 739
  • Forks: 117
  • Packages: 3
https://github.com/dib-lab/khmer

khmer release v2.1: software for biological sequence analysis - Published in JOSS (2017)
bioinformatics bloom-filter count-min-sketch dna graph-traversal k-mer python
Added: 2 months ago - Last Synced: 2 months ago - Created: May 15, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5159
  • Committers: 87
  • Issues: 70
  • Pull Requests: 48
  • Owner: dib-lab
  • Stars: 782
  • Forks: 297
  • Packages: 2
  • Downloads: 3,383
https://github.com/ropensci/visdat

visdat: Visualising Whole Data Frames - Published in JOSS (2017)
exploratory-data-analysis missingness peer-reviewed r r-package ropensci rstats visualisation
Added: 2 months ago - Last Synced: 2 months ago - Created: January 28, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 476
  • Committers: 19
  • Issues: 80
  • Pull Requests: 27
  • Owner: ropensci
  • Stars: 459
  • Forks: 46
  • Packages: 3
  • Downloads: 33,967
https://github.com/sequana/sequana

'Sequana': a Set of Snakemake NGS pipelines - Published in JOSS (2017)
coverage de-novo ngs pacbio rna-seq sequanix snakemake taxonomy variant-calling
Added: 2 months ago - Last Synced: 2 months ago - Created: March 07, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 5816
  • Committers: 10
  • Issues: 54
  • Pull Requests: 139
  • Owner: sequana
  • Stars: 148
  • Forks: 28
  • Packages: 1
  • Downloads: 864
https://github.com/adrn/schwimmbad

schwimmbad: A uniform interface to parallel processing pools in Python - Published in JOSS (2017)
mpi multiprocessing parallel-computing
Added: 2 months ago - Last Synced: 2 months ago - Created: September 05, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 194
  • Committers: 9
  • Issues: 33
  • Pull Requests: 50
  • Owner: adrn
  • Stars: 120
  • Forks: 19
  • Packages: 2
  • Downloads: 26,286
https://github.com/go-hep/hep

Go-HEP: libraries for High Energy Physics analyses in Go - Published in JOSS (2017)
cern cern-analysis go go-hep godoc golang hep hepmc lhc physics-analyses plot plotting root-cern statistics xrootd
Added: 2 months ago - Last Synced: 2 months ago - Created: February 07, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Go
  • Commits: 2799
  • Committers: 18
  • Issues: 55
  • Pull Requests: 154
  • Owner: go-hep
  • Stars: 253
  • Forks: 38
  • Packages: 1
https://github.com/arfc/moltres

Moltres: finite element based simulation of molten salt reactors - Published in JOSS (2018)
fem finite-elements molten-salt-reactors moose multi-physics object-oriented parallel software
Added: 2 months ago - Last Synced: 2 months ago - Created: August 18, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 1101
  • Committers: 29
  • Issues: 60
  • Pull Requests: 141
  • Owner: arfc
  • Stars: 74
  • Forks: 43
  • Packages: 0
https://github.com/ljvmiranda921/pyswarms

PySwarms: a research toolkit for Particle Swarm Optimization in Python - Published in JOSS (2018)
algorithm discrete-optimization global-optimization machine-learning metaheuristics optimization optimization-algorithms optimization-tools particle-swarm-optimization pso swarm-intelligence
Added: 2 months ago - Last Synced: 2 months ago - Created: July 12, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 364
  • Committers: 44
  • Issues: 90
  • Pull Requests: 39
  • Owner: ljvmiranda921
  • Stars: 1364
  • Forks: 339
  • Packages: 16
  • Downloads: 71,898
https://github.com/expfactory/expfactory

The Experiment Factory: Reproducible Experiment Containers - Published in JOSS (2018)
battery container experiment-factory experiments expfactory psychology reproducible singularity
Added: 2 months ago - Last Synced: 2 months ago - Created: October 28, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 517
  • Committers: 4
  • Issues: 59
  • Pull Requests: 48
  • Owner: expfactory
  • Stars: 39
  • Forks: 14
  • Packages: 1
  • Downloads: 1,264
https://github.com/piermorel/gramm

Gramm: grammar of graphics plotting in Matlab - Published in JOSS (2018)
data-visualization matlab plot statistics stats visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: December 10, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 218
  • Committers: 13
  • Issues: 98
  • Pull Requests: 30
  • Owner: piermorel
  • Stars: 802
  • Forks: 221
  • Packages: 1
https://github.com/ropensci/usaboundaries

USAboundaries: Historical and Contemporary Boundaries of the United States of America - Published in JOSS (2018)
digital-history history r r-package rstats spatial-data
Added: 2 months ago - Last Synced: 2 months ago - Created: October 09, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 216
  • Committers: 8
  • Issues: 44
  • Pull Requests: 8
  • Owner: ropensci
  • Stars: 64
  • Forks: 10
  • Packages: 3
https://github.com/julianlsolvers/optim.jl

Optim: A mathematical optimization package for Julia - Published in JOSS (2018)
julia optim optimisation optimization unconstrained-optimisation unconstrained-optimization
Added: 2 months ago - Last Synced: 2 months ago - Created: April 04, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 893
  • Committers: 125
  • Issues: 141
  • Pull Requests: 171
  • Owner: JuliaNLSolvers
  • Stars: 1178
  • Forks: 234
  • Packages: 3
  • Downloads: 12,357
https://github.com/terrytangyuan/autoplotly

autoplotly: An R package for automatic generation of interactive visualizations for statistical results - Published in JOSS (2018)
data-visualization ggplot2 interactive-visualizations machine-learning plotly plotlyjs rstats statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 07, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 62
  • Committers: 2
  • Issues: 5
  • Pull Requests: 2
  • Owner: terrytangyuan
  • Stars: 92
  • Forks: 11
  • Packages: 3
  • Downloads: 779
https://github.com/JuliaEarth/GeoStats.jl

GeoStats.jl -- High-performance geostatistics in Julia - Published in JOSS (2018)
datascience geo geospatial geostatistics gis spatial-statistics statistical-learning statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: April 12, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 274
  • Committers: 6
  • Issues: 141
  • Pull Requests: 349
  • Owner: JuliaEarth
  • Stars: 566
  • Forks: 66
  • Packages: 3
  • Downloads: 454
https://github.com/sepandhaghighi/pycm

PyCM: Multiclass confusion matrix library in Python - Published in JOSS (2018)
accuracy ai artificial-intelligence classification confusion-matrix data data-analysis data-mining data-science deep-learning deeplearning evaluation machine-learning mathematics matrix ml multiclass-classification neural-network statistical-analysis statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 22, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2864
  • Committers: 18
  • Issues: 42
  • Pull Requests: 230
  • Owner: sepandhaghighi
  • Stars: 1489
  • Forks: 125
  • Packages: 2
  • Downloads: 183,271
https://github.com/strengejacke/sjmisc

sjmisc: Data and Variable Transformation Functions - Published in JOSS (2018)
data-transformation data-wrangling labelled-data r recoding
Added: 2 months ago - Last Synced: 2 months ago - Created: March 21, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 929
  • Committers: 13
  • Issues: 84
  • Pull Requests: 18
  • Owner: strengejacke
  • Stars: 161
  • Forks: 24
  • Packages: 2
  • Downloads: 46,244
https://github.com/ellessenne/rsimsum

rsimsum: Summarise results from Monte Carlo simulation studies - Published in JOSS (2018)
biostatistics monte-carlo-error r rstats simulation simulation-study simulations statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: May 25, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 606
  • Committers: 7
  • Issues: 42
  • Pull Requests: 17
  • Owner: ellessenne
  • Stars: 30
  • Forks: 7
  • Packages: 1
  • Downloads: 610
https://github.com/strengejacke/ggeffects

ggeffects: Tidy Data Frames of Marginal Effects from Regression Models - Published in JOSS (2018)
estimated-marginal-means hacktoberfest marginal-effects prediction
Added: 2 months ago - Last Synced: 2 months ago - Created: June 01, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 1942
  • Committers: 13
  • Issues: 200
  • Pull Requests: 362
  • Owner: strengejacke
  • Stars: 602
  • Forks: 40
  • Packages: 2
  • Downloads: 51,141
https://github.com/Frost-group/PolaronMobility.jl

PolaronMobility.jl: Implementation of the Feynman variational polaron model - Published in JOSS (2018)
mobility path-integral physics polarons solid-state
Added: 2 months ago - Last Synced: 2 months ago - Created: April 03, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 498
  • Committers: 2
  • Issues: 15
  • Pull Requests: 7
https://github.com/raamana/graynet

graynet: single-subject morphometric networks for neuroscience connectivity applications - Published in JOSS (2018)
anatomical-mri cortical-network cortical-thickness feature-extraction freesurfer graph gray-matter machine-learning mindboggle network-analysis neuroimaging neuroscience structural-mri thickness vbm voxel-based
Added: 2 months ago - Last Synced: 2 months ago - Created: July 27, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 297
  • Committers: 3
  • Issues: 25
  • Pull Requests: 39
  • Owner: raamana
  • Stars: 38
  • Forks: 8
  • Packages: 1
  • Downloads: 102
https://github.com/benjamin-lee/codonadaptationindex

Python Implementation of Codon Adaptation Index - Published in JOSS (2018)
bioinformatics codons genetics
Added: 2 months ago - Last Synced: 2 months ago - Created: August 14, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 111
  • Committers: 3
  • Issues: 11
  • Pull Requests: 6
  • Owner: Benjamin-Lee
  • Stars: 37
  • Forks: 11
  • Packages: 1
  • Downloads: 258
https://github.com/fatiando/verde

Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)
earth-science fatiando-a-terra geophysics geoscience geospatial interpolation machine-learning python python3 scipy scipy-stack
Added: 2 months ago - Last Synced: 2 months ago - Created: April 25, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 337
  • Committers: 15
  • Issues: 61
  • Pull Requests: 218
  • Owner: fatiando
  • Stars: 642
  • Forks: 74
  • Packages: 3
  • Downloads: 9,768
https://github.com/kpeeters/cadabra2

Cadabra2: computer algebra for field theory revisited - Published in JOSS (2018)
cadabra2 computer-algebra computer-algebra-system cplusplus mathematics physics python3 science-research symbolic-manipulation sympy tensor-algebra tensors
Added: 2 months ago - Last Synced: 2 months ago - Created: November 03, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 3709
  • Committers: 18
  • Issues: 182
  • Pull Requests: 41
  • Owner: kpeeters
  • Stars: 257
  • Forks: 43
  • Packages: 3
https://github.com/arviz-devs/arviz

ArviZ a unified library for exploratory analysis of Bayesian models in Python - Published in JOSS (2019)
bayesian closember python
Added: 2 months ago - Last Synced: 2 months ago - Created: July 29, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1562
  • Committers: 183
  • Issues: 161
  • Pull Requests: 293
  • Owner: arviz-devs
  • Stars: 1737
  • Forks: 458
  • Packages: 5
  • Downloads: 3,572,304
https://github.com/python-hydro/pyro2

pyro: a framework for hydrodynamics explorations and prototyping - Published in JOSS (2019)
advection astrophysical-simulation finite-volume finite-volume-methods hydrodynamics multigrid pde pyro python simulation solver
Added: 2 months ago - Last Synced: 2 months ago - Created: June 06, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 1649
  • Committers: 18
  • Issues: 41
  • Pull Requests: 361
  • Owner: python-hydro
  • Stars: 327
  • Forks: 129
  • Packages: 1
  • Downloads: 130
https://github.com/climateequityreferenceproject/cerc-web

The Climate Equity Reference Calculator - Published in JOSS (2019)
climate-change climate-justice effort-sharing equity-calculator unfccc
Added: 2 months ago - Last Synced: 2 months ago - Created: October 03, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: PHP
  • Commits: 611
  • Committers: 4
  • Issues: 2
  • Pull Requests: 5
https://github.com/pmeal/porespy

PoreSpy: A Python Toolkit for Quantitative Analysis of Porous Media Images - Published in JOSS (2019)
3d-images image-analysis porespy porous-materials porous-media python scientific-visualization tomography voxel-generator
Added: 2 months ago - Last Synced: 2 months ago - Created: May 06, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 3761
  • Committers: 42
  • Issues: 181
  • Pull Requests: 221
  • Owner: PMEAL
  • Stars: 371
  • Forks: 110
  • Packages: 2
  • Downloads: 6,981
https://github.com/brandondube/prysm

prysm: A Python optics module - Published in JOSS (2019)
4d diffraction forbes-polynomial gpu-computing modeling mtf mtf-mapper optics phase-retrieval phasecam propagation psf python q-polynomial raytracing trioptics wavefront wavefront-sensing zernike zygo
Added: 2 months ago - Last Synced: 2 months ago - Created: February 13, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1607
  • Committers: 12
  • Issues: 91
  • Pull Requests: 13
  • Owner: brandondube
  • Stars: 315
  • Forks: 53
  • Packages: 1
  • Downloads: 914
https://github.com/amrex-codes/amrex

AMReX: a framework for block-structured adaptive mesh refinement - Published in JOSS (2019)
adaptive-mesh-refinement amr amrex high-performance-computing hpsf scientific-computing
Added: 2 months ago - Last Synced: 2 months ago - Created: April 28, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 24283
  • Committers: 239
  • Issues: 271
  • Pull Requests: 893
https://github.com/tqdm/tqdm

tqdm: A Fast, Extensible Progress Meter for Python and CLI - Published in JOSS (2019)
cli closember console discord gui jupyter keras meter pandas parallel progress progress-bar progressbar progressmeter python rate telegram terminal time utilities
Added: 2 months ago - Last Synced: 2 months ago - Created: June 03, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1726
  • Committers: 117
  • Issues: 235
  • Pull Requests: 226
  • Owner: tqdm
  • Stars: 30563
  • Forks: 1401
  • Packages: 4
  • Downloads: 106,596
https://github.com/pyvista/pyvista

PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)
3d fem finite-element-analysis finite-elements hacktoberfest mesh mesh-processing meshviewer open-science plotting python scientific-research scientific-visualization visualization vtk
Added: 2 months ago - Last Synced: 2 months ago - Created: May 31, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 5362
  • Committers: 187
  • Issues: 752
  • Pull Requests: 3680
  • Owner: pyvista
  • Stars: 3328
  • Forks: 595
  • Packages: 4
  • Downloads: 881,583
https://github.com/magneticparticleimaging/mpifiles.jl

MPIFiles.jl: A Julia Package for Magnetic Particle Imaging Files - Published in JOSS (2019)
julia mpi
Added: 2 months ago - Last Synced: 2 months ago - Created: May 21, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 898
  • Committers: 24
  • Issues: 47
  • Pull Requests: 135
https://github.com/opengeovis/pvgeo

PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)
3d data-visualization geophysics geosciences model-building open-science paraview paraview-plugin python visual-data-integration visualization vtk
Added: 2 months ago - Last Synced: 2 months ago - Created: July 18, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1730
  • Committers: 7
  • Issues: 46
  • Pull Requests: 64
  • Owner: OpenGeoVis
  • Stars: 227
  • Forks: 43
  • Packages: 3
  • Downloads: 2,414
https://github.com/xoolive/traffic

traffic, a toolbox for processing and analysing air traffic data - Published in JOSS (2019)
adsb air-traffic-data data-analytics data-science data-visualisation declarative-pipeline mode-s trajectory
Added: 2 months ago - Last Synced: 2 months ago - Created: March 27, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1540
  • Committers: 38
  • Issues: 38
  • Pull Requests: 287
  • Owner: xoolive
  • Stars: 440
  • Forks: 86
  • Packages: 2
  • Downloads: 6,321
https://github.com/uscbiostats/slurmr

slurmR: A lightweight wrapper for HPC with Slurm - Published in JOSS (2021)
bioinformatics hpc rpackage rstats slurm
Added: 2 months ago - Last Synced: 2 months ago - Created: August 24, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 275
  • Committers: 3
  • Issues: 42
  • Pull Requests: 6
  • Owner: USCbiostats
  • Stars: 60
  • Forks: 11
  • Packages: 1
  • Downloads: 575
https://github.com/emsig/emg3d

emg3d: A multigrid solver for 3D electromagnetic diffusion - Published in JOSS (2019)
csem electromagnetic geophysics modelling multigrid python
Added: 2 months ago - Last Synced: 2 months ago - Created: April 17, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
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  • Main Language: Python
  • Commits: 346
  • Committers: 2
  • Issues: 31
  • Pull Requests: 112
  • Owner: emsig
  • Stars: 70
  • Forks: 8
  • Packages: 2
  • Downloads: 496
https://github.com/bihealth/altamisa

AltamISA: a Python API for ISA-Tab files - Published in JOSS (2019)
bioinformatics isa isa-tab
Added: 2 months ago - Last Synced: 2 months ago - Created: February 22, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 147
  • Committers: 8
  • Issues: 52
  • Pull Requests: 118
  • Owner: bihealth
  • Stars: 5
  • Forks: 2
  • Packages: 1
  • Downloads: 1,496
https://github.com/jlustigy/coronagraph

coronagraph: Telescope Noise Modeling for Exoplanets in Python - Published in JOSS (2019)
astronomy coronagraph exoplanets spectroscopy
Added: 2 months ago - Last Synced: 2 months ago - Created: January 29, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 239
  • Committers: 3
  • Issues: 6
  • Pull Requests: 4
  • Owner: jlustigy
  • Stars: 6
  • Forks: 8
  • Packages: 1
  • Downloads: 334
https://github.com/zfit/phasespace

phasespace: n-body phase space generation in Python - Published in JOSS (2019)
hep physics-simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: February 27, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 588
  • Committers: 11
  • Issues: 25
  • Pull Requests: 123
  • Owner: zfit
  • Stars: 24
  • Forks: 10
  • Packages: 2
  • Downloads: 1,079
https://github.com/earthlab/earthpy

EarthPy: A Python package that makes it easier to explore and plot raster and vector data using open source Python tools. - Published in JOSS (2019)
education python raster spatial-data vector
Added: 2 months ago - Last Synced: 2 months ago - Created: February 20, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 947
  • Committers: 38
  • Issues: 11
  • Pull Requests: 176
  • Owner: earthlab
  • Stars: 529
  • Forks: 162
  • Packages: 3
  • Downloads: 17,184
https://github.com/paudetseis/telewavesim

Telewavesim: Python software for teleseismic body wave modeling - Published in JOSS (2019)
anisotropy fortran geophysics modeling obs plane-waves python receiver-functions seismology sks
Added: 2 months ago - Last Synced: 2 months ago - Created: August 26, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 236
  • Committers: 3
  • Issues: 25
  • Pull Requests: 27
  • Owner: paudetseis
  • Stars: 78
  • Forks: 19
  • Packages: 1
  • Downloads: 58
https://github.com/ropensci/opentripplanner

OpenTripPlanner for R - Published in JOSS (2019)
data isochrones java opentripplanner otp public-transport r routing transport transportation-planning
Added: 2 months ago - Last Synced: 2 months ago - Created: October 19, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 603
  • Committers: 11
  • Issues: 81
  • Pull Requests: 38
  • Owner: ropensci
  • Stars: 86
  • Forks: 21
  • Packages: 1
  • Downloads: 1,488
https://github.com/ytree-project/ytree

ytree: A Python package for analyzing merger trees - Published in JOSS (2019)
analysis astronomy astrophysics data merger-trees python simulations trees
Added: 2 months ago - Last Synced: 2 months ago - Created: July 27, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1448
  • Committers: 6
  • Issues: 24
  • Pull Requests: 127
  • Owner: ytree-project
  • Stars: 16
  • Forks: 10
  • Packages: 2
  • Downloads: 368
https://github.com/amrex-astro/maestroex

MAESTROeX: A Massively Parallel Low Mach Number Astrophysical Solver - Published in JOSS (2019)
amrex astrophysical-simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: September 18, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 2235
  • Committers: 28
  • Issues: 22
  • Pull Requests: 145
https://github.com/larq/larq

Larq: An Open-Source Library for Training Binarized Neural Networks - Published in JOSS (2020)
binarized-neural-networks binder deep-learning keras larq machine-learning python quantized-neural-networks tensorflow
Added: 2 months ago - Last Synced: 2 months ago - Created: March 18, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 735
  • Committers: 18
  • Issues: 46
  • Pull Requests: 180
  • Owner: larq
  • Stars: 718
  • Forks: 85
  • Packages: 1
  • Downloads: 2,574
https://github.com/oschwengers/referenceseeker

ReferenceSeeker: rapid determination of appropriate reference genomes - Published in JOSS (2020)
ani bioinformatics mash microbiology reference-genomes refseq wgs
Added: 2 months ago - Last Synced: 2 months ago - Created: November 01, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 222
  • Committers: 1
  • Issues: 27
  • Pull Requests: 4
  • Owner: oschwengers
  • Stars: 97
  • Forks: 6
  • Packages: 1
  • Downloads: 32
https://github.com/ropensci/osfr

osfr: An R Interface to the Open Science Framework - Published in JOSS (2020)
open-science osf reproducible-research
Added: 2 months ago - Last Synced: 2 months ago - Created: September 11, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 1003
  • Committers: 18
  • Issues: 69
  • Pull Requests: 37
  • Owner: ropensci
  • Stars: 151
  • Forks: 30
  • Packages: 2
  • Downloads: 2,104
https://github.com/artivis/manif

Manif: A micro Lie theory library for state estimation in robotics applications - Published in JOSS (2020)
2d 3d c-plus-plus computer-vision cpp11 geometry header-only lie-groups lie-theory python3 robotics slam state-estimation
Added: 2 months ago - Last Synced: 2 months ago - Created: April 16, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 691
  • Committers: 14
  • Issues: 80
  • Pull Requests: 101
  • Owner: artivis
  • Stars: 1678
  • Forks: 261
  • Packages: 2
https://github.com/pachadotdev/economiccomplexity

Economiccomplexity: Computational Methods for Economic Complexity - Published in JOSS (2020)
economic-complexity eigenvalues eigenvectors graphs international-trade matrix networks r recursive-algorithm
Added: 2 months ago - Last Synced: 2 months ago - Created: February 20, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 135
  • Committers: 7
  • Issues: 20
  • Pull Requests: 3
https://github.com/NeuroDiffGym/neurodiffeq

NeuroDiffEq: A Python package for solving differential equations with neural networks - Published in JOSS (2020)
artificial-intelligence boundary-value-problem deep-learning differential-equations initial-value-problem mathematical-modelling neural-networks ode odes pde-solver physics-informed-neural-networks pinn pypi pytorch scientific-computing time-series
Added: 2 months ago - Last Synced: 2 months ago - Created: March 28, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1112
  • Committers: 22
  • Issues: 51
  • Pull Requests: 72
  • Owner: NeuroDiffGym
  • Stars: 766
  • Forks: 99
  • Packages: 1
  • Downloads: 394
https://github.com/underworldcode/underworld2

Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud - Published in JOSS (2020)
auscope docker finite-element-methods geodynamics hacktoberfest hacktoberfest2020 hacktoberfest2021 particle-in-cell petsc python underworld
Added: 2 months ago - Last Synced: 2 months ago - Created: September 28, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C
  • Commits: 1967
  • Committers: 34
  • Issues: 135
  • Pull Requests: 53
  • Owner: underworldcode
  • Stars: 197
  • Forks: 64
  • Packages: 2
  • Downloads: 152
https://github.com/telatin/covtobed

covtobed: a simple and fast tool to extract coverage tracks from BAM files - Published in JOSS (2020)
alignments bam-files bed bioconda bioinformatics bioinformatics-tool sequence-coverage
Added: 2 months ago - Last Synced: 2 months ago - Created: December 09, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Makefile
  • Commits: 289
  • Committers: 2
  • Issues: 13
  • Pull Requests: 2
  • Owner: telatin
  • Stars: 44
  • Forks: 3
  • Packages: 0
https://github.com/babinyurii/recan

Recan: Python tool for analysis of recombination events in viral genomes - Published in JOSS (2020)
alignment bioinformatics distance-plots dna-recombination genetic-distances python recombination-events virology
Added: 2 months ago - Last Synced: 2 months ago - Created: May 30, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 285
  • Committers: 3
  • Issues: 15
  • Pull Requests: 5
  • Owner: babinyurii
  • Stars: 10
  • Forks: 7
  • Packages: 1
  • Downloads: 36
https://github.com/samuelduchesne/archetypal

archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)
archetypes buildings energy-simulation energyplus energyplus-models python simulation-templates umi umi-template visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: October 17, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2626
  • Committers: 7
  • Issues: 14
  • Pull Requests: 168
  • Owner: samuelduchesne
  • Stars: 17
  • Forks: 9
  • Packages: 1
  • Downloads: 1,866
https://github.com/sap218/jabberwocky

Jabberwocky: an ontology-aware toolkit for manipulating text - Published in JOSS (2020)
annotation grep jabberwocky ontology plotting python synonyms text-mining textual-data tfidf
Added: 2 months ago - Last Synced: 2 months ago - Created: December 12, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 123
  • Committers: 3
  • Issues: 13
  • Pull Requests: 7
  • Owner: sap218
  • Stars: 16
  • Forks: 1
  • Packages: 1
https://github.com/gee-community/geemap

geemap: A Python package for interactive mapping with Google Earth Engine - Published in JOSS (2020)
colab data-science dataviz earth-engine earthengine folium geospatial gis google-earth-engine image-processing ipyleaflet ipywidgets jupyter jupyter-notebook landsat mapping python remote-sensing streamlit streamlit-webapp
Added: 2 months ago - Last Synced: 2 months ago - Created: March 08, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1675
  • Committers: 61
  • Issues: 245
  • Pull Requests: 544
  • Owner: gee-community
  • Stars: 3768
  • Forks: 1124
  • Packages: 4
  • Downloads: 69,328
https://github.com/rgerum/pylustrator

pylustrator: code generation for reproducible figures for publication - Published in JOSS (2020)
code-generation gui interactive matplotlib visualisation
Added: 2 months ago - Last Synced: 2 months ago - Created: June 21, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 497
  • Committers: 9
  • Issues: 58
  • Pull Requests: 19
  • Owner: rgerum
  • Stars: 881
  • Forks: 41
  • Packages: 2
  • Downloads: 502
https://github.com/csdms/bmi

The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences - Published in JOSS (2020)
bmi c csdms cxx fortran geosciences interface java javascript julia numerical-modeling python
Added: 2 months ago - Last Synced: 2 months ago - Created: June 05, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: TeX
  • Commits: 343
  • Committers: 14
  • Issues: 52
  • Pull Requests: 123
  • Owner: csdms
  • Stars: 54
  • Forks: 18
  • Packages: 0
https://github.com/keurfonluu/toughio

toughio: Pre- and post-processing Python library for TOUGH - Published in JOSS (2020)
io postprocessing preprocessing tough2 tough3
Added: 2 months ago - Last Synced: 2 months ago - Created: July 22, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1338
  • Committers: 1
  • Issues: 53
  • Pull Requests: 85
  • Owner: keurfonluu
  • Stars: 66
  • Forks: 9
  • Packages: 1
  • Downloads: 572
https://github.com/swiftsim/swiftsimio

swiftsimio: A Python library for reading SWIFT data - Published in JOSS (2020)
astrophysics cosmology hdf5 particle simulation sph
Added: 2 months ago - Last Synced: 2 months ago - Created: March 11, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 842
  • Committers: 22
  • Issues: 92
  • Pull Requests: 163
  • Owner: SWIFTSIM
  • Stars: 26
  • Forks: 14
  • Packages: 1
  • Downloads: 7,061
https://github.com/stemangiola/tidyheatmap

tidyHeatmap: an R package for modular heatmap production based on tidy principles - Published in JOSS (2020)
brewer complexheatmap custom-palette dplyr graphviz heatmap mtcars plotting r rstudio scale tibble tidy tidy-data-frame tidybulk tidyverse viridis
Added: 2 months ago - Last Synced: 2 months ago - Created: January 13, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 460
  • Committers: 10
  • Issues: 56
  • Pull Requests: 95
  • Owner: stemangiola
  • Stars: 347
  • Forks: 25
  • Packages: 3
  • Downloads: 1,422
https://github.com/cicirello/chips-n-salsa

Chips-n-Salsa: A Java Library of Customizable, Hybridizable, Iterative, Parallel, Stochastic, and Self-Adaptive Local Search Algorithms - Published in JOSS (2020)
adaptive discrete-optimization evolutionary-computation genetic-algorithm hbss hill-climbing java local-search metaheuristics multithreading mutation optimization parallel-computing permutations randomized-heuristics scheduling search-algorithm simulated-annealing stochastic-sampling vbss
Added: 2 months ago - Last Synced: 2 months ago - Created: June 17, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Java
  • Commits: 2002
  • Committers: 4
  • Issues: 54
  • Pull Requests: 315
  • Owner: cicirello
  • Stars: 70
  • Forks: 39
  • Packages: 3
https://github.com/flintproject/flint

Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations - Published in JOSS (2020)
biology cellml ode phml physiology sbml sde simulator
Added: 2 months ago - Last Synced: 2 months ago - Created: March 27, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 1806
  • Committers: 3
  • Issues: 28
  • Pull Requests: 3
https://github.com/easystats/parameters

Extracting, Computing and Exploring the Parameters of Statistical Models using R - Published in JOSS (2020)
beta bootstrap ci confidence-intervals data-reduction easystats fa feature-extraction feature-reduction hacktoberfest parameters pca pvalues r r-package regression-models robust-statistics standardize standardized-estimates statistical-models
Added: 2 months ago - Last Synced: 2 months ago - Created: February 09, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 4967
  • Committers: 24
  • Issues: 144
  • Pull Requests: 356
  • Owner: easystats
  • Stars: 477
  • Forks: 40
  • Packages: 3
  • Downloads: 109,986
https://github.com/brainglobe/brainglobe-atlasapi

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)
atlases brain microscopy neuroscience python registration visualisation
Added: 2 months ago - Last Synced: 2 months ago - Created: April 30, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 408
  • Committers: 36
  • Issues: 239
  • Pull Requests: 264
  • Owner: brainglobe
  • Stars: 164
  • Forks: 49
  • Packages: 1
  • Downloads: 6,909
https://github.com/jboynyc/textnets

textnets: A Python package for text analysis with networks - Published in JOSS (2020)
computational-social-science network-analysis nlp sociology text-analysis text-as-data visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: December 15, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 905
  • Committers: 9
  • Issues: 43
  • Pull Requests: 22
  • Owner: jboynyc
  • Stars: 289
  • Forks: 24
  • Packages: 2
  • Downloads: 2,288
https://github.com/amrex-astro/castro

CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code - Published in JOSS (2020)
adaptive-mesh-refinement amr amrex astrophysical-simulation astrophysics castro cfd gravity hydrodynamics pde radiation reactions
Added: 2 months ago - Last Synced: 2 months ago - Created: January 21, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 9000
  • Committers: 63
  • Issues: 100
  • Pull Requests: 741
https://github.com/juliadynamics/drwatson.jl

DrWatson: the perfect sidekick for your scientific inquiries - Published in JOSS (2020)
hacktoberfest project-assistant project-management science science-research setup-tool simulations
Added: 2 months ago - Last Synced: 2 months ago - Created: January 29, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: Julia
  • Commits: 533
  • Committers: 74
  • Issues: 87
  • Pull Requests: 77
  • Owner: JuliaDynamics
  • Stars: 889
  • Forks: 95
  • Packages: 1
  • Downloads: 954
https://github.com/biosteamdevelopmentgroup/thermosteam

Thermosteam: BioSTEAM's Premier Thermodynamic Engine - Published in JOSS (2020)
chemical chemical-engineering equations-of-state liquid-liquid-equilibrium material-and-energy-balance mixture properties reaction thermodynamics vapor-liquid-equilibrium
Added: 2 months ago - Last Synced: 2 months ago - Created: November 02, 2019

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 1285
  • Committers: 7
  • Issues: 72
  • Pull Requests: 27
https://github.com/scikit-hep/pyhf

pyhf: pure-Python implementation of HistFactory statistical models - Published in JOSS (2021)
asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python scientific-computations scikit-hep scipy statistical-inference statistics
Added: 2 months ago - Last Synced: 2 months ago - Created: January 24, 2018

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  • Commits: 1451
  • Committers: 36
  • Issues: 124
  • Pull Requests: 492
  • Owner: scikit-hep
  • Stars: 291
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  • Packages: 2
  • Downloads: 1,253,052
https://github.com/dynamicslab/pysensors

PySensors: A Python package for sparse sensor placement - Published in JOSS (2021)
optimization-tools sensor sensor-placement sensors
Added: 2 months ago - Last Synced: 2 months ago - Created: May 01, 2020

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  • Main Language: Python
  • Commits: 396
  • Committers: 10
  • Issues: 8
  • Pull Requests: 29
  • Owner: dynamicslab
  • Stars: 103
  • Forks: 25
  • Packages: 1
  • Downloads: 1,730
https://github.com/learningsimulator/learningsimulator

Learning Simulator: A simulation software for animal and human learning - Published in JOSS (2021)
associative-learning behavior gui mathematical-modelling python reinforcement-learning simulation
Added: 2 months ago - Last Synced: 2 months ago - Created: November 25, 2020

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  • Main Language: Python
  • Commits: 313
  • Committers: 3
  • Issues: 76
  • Pull Requests: 25
https://github.com/ghislainv/forestatrisk

forestatrisk: a Python package for modelling and forecasting deforestation in the tropics - Published in JOSS (2021)
biodiversity-scenario co2-emissions deforestation deforestation-risk forecasting forest-cover-change ipbes ipcc land-use-change protected-areas python redd roads spatial-analysis spatial-autocorrelation spatial-modelling tropical-forests
Added: 2 months ago - Last Synced: 2 months ago - Created: December 01, 2016

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  • Main Language: Python
  • Commits: 688
  • Committers: 7
  • Issues: 38
  • Pull Requests: 53
  • Owner: ghislainv
  • Stars: 129
  • Forks: 30
  • Packages: 2
  • Downloads: 950
https://github.com/opengeos/lidar

lidar: A Python package for delineating nested surface depressions from digital elevation data - Published in JOSS (2021)
digital-elevation-model gis hydrological image-processing lidar python remote-sensing terrain-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: May 14, 2018

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  • Main Language: Python
  • Commits: 206
  • Committers: 6
  • Issues: 24
  • Pull Requests: 49
  • Owner: opengeos
  • Stars: 291
  • Forks: 54
  • Packages: 1
  • Downloads: 1,184
https://github.com/polsartools/PolSARtools-QGIS

PolSAR tools: A QGIS plugin for generating SAR descriptors - Published in JOSS (2021)
polarimetric-decompositions polarimetric-sar-data qgis3-plugin radar-vegetation sar
Added: 2 months ago - Last Synced: 2 months ago - Created: February 06, 2020

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  • Main Language: Python
  • Commits: 267
  • Committers: 5
  • Issues: 2
  • Pull Requests: 1
https://github.com/isoverse/isoreader

Isoreader: An R package to read stable isotope data files for reproducible research - Published in JOSS (2021)
data ecology geochemistry isotopes r
Added: 2 months ago - Last Synced: 2 months ago - Created: May 08, 2017

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  • Main Language: R
  • Commits: 815
  • Committers: 3
  • Issues: 55
  • Pull Requests: 47
  • Owner: isoverse
  • Stars: 11
  • Forks: 5
  • Packages: 0
https://github.com/didiermurillof/fieldhub

FielDHub: A Shiny App for Design of Experiments in Life Sciences - Published in JOSS (2021)
agricultural breeding design doe experimental plantbreeding r rstats shiny
Added: 2 months ago - Last Synced: 2 months ago - Created: February 22, 2021

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  • Main Language: HTML
  • Commits: 360
  • Committers: 9
  • Issues: 24
  • Pull Requests: 40
  • Owner: DidierMurilloF
  • Stars: 53
  • Forks: 23
  • Packages: 1
  • Downloads: 950
https://github.com/andreasmang/claire

CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures - Published in JOSS (2021)
image-registration medical-image-computing parallel-computing
Added: 2 months ago - Last Synced: 2 months ago - Created: May 12, 2017

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  • Main Language: C++
  • Commits: 1179
  • Committers: 35
  • Issues: 14
  • Pull Requests: 1
https://github.com/exoplanet-dev/exoplanet

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series - Published in JOSS (2021)
astronomy astrophysics bayesian-inference exoplanet exoplanet-radial-velocities exoplanet-transits exoplanets gaussian-processes mcmc pymc3 time-series time-series-analysis
Added: 2 months ago - Last Synced: 2 months ago - Created: June 20, 2018

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  • Main Language: Python
  • Commits: 1210
  • Committers: 17
  • Issues: 50
  • Pull Requests: 142
  • Owner: exoplanet-dev
  • Stars: 225
  • Forks: 54
  • Packages: 2
  • Downloads: 11,800
https://github.com/jofmi/agentpy

AgentPy: A package for agent-based modeling in Python - Published in JOSS (2021)
abm agent-based-modeling agent-based-simulation agentpy complex-systems networks networkx python salib
Added: 2 months ago - Last Synced: 2 months ago - Created: June 19, 2020

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  • Main Language: Python
  • Commits: 312
  • Committers: 6
  • Issues: 43
  • Pull Requests: 27
  • Owner: jofmi
  • Stars: 358
  • Forks: 41
  • Packages: 0
https://github.com/datalad/datalad

DataLad: distributed system for joint management of code, data, and their relationship - Published in JOSS (2021)
closember data-storage dataset git-annex python usable
Added: 2 months ago - Last Synced: 2 months ago - Created: November 01, 2013

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  • Main Language: Python
  • Commits: 13447
  • Committers: 61
  • Issues: 302
  • Pull Requests: 378
  • Owner: datalad
  • Stars: 612
  • Forks: 115
  • Packages: 2
  • Downloads: 32,880
https://github.com/amrex-astro/nyx

Nyx: A Massively Parallel AMR Code for Computational Cosmology - Published in JOSS (2021)
amrex cosmology
Added: 2 months ago - Last Synced: 2 months ago - Created: August 02, 2016

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  • Main Language: C++
  • Commits: 2177
  • Committers: 34
  • Issues: 27
  • Pull Requests: 81
https://github.com/virgesmith/neworder

neworder: a dynamic microsimulation framework for Python - Published in JOSS (2021)
cplusplus-20 markov-chain microsimulation monte-carlo mpi numpy pandas pybind11 python3
Added: 2 months ago - Last Synced: 2 months ago - Created: November 25, 2017

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  • Commits: 998
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  • Issues: 64
  • Pull Requests: 29
  • Owner: virgesmith
  • Stars: 20
  • Forks: 4
  • Packages: 1
  • Downloads: 838
https://github.com/mlr-org/mcboost

mcboost: Multi-Calibration Boosting for R - Published in JOSS (2021)
bias-correction bias-detection classification ethics fairness fairness-ai fairness-ml machine-learning post-processing responsible-ai
Added: 2 months ago - Last Synced: 2 months ago - Created: December 28, 2020

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  • Main Language: R
  • Commits: 298
  • Committers: 8
  • Issues: 38
  • Pull Requests: 8
  • Owner: mlr-org
  • Stars: 33
  • Forks: 4
  • Packages: 1
  • Downloads: 325
https://github.com/derrynknife/surpyval

SurPyval: Survival Analysis with Python - Published in JOSS (2021)
actuarial-science churn-prediction non-parametric parametric-distribution parametric-methods probability-plot reliability reliability-analysis reliability-engineering risk-analysis survival-analysis weibull
Added: 2 months ago - Last Synced: 2 months ago - Created: December 15, 2018

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  • Main Language: Python
  • Commits: 668
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  • Issues: 36
  • Pull Requests: 15
  • Owner: derrynknife
  • Stars: 48
  • Forks: 5
  • Packages: 1
  • Downloads: 13,503
https://github.com/roshansamuel/saras

SARAS: A general-purpose PDE solver for fluid dynamics - Published in JOSS (2021)
blitz computational-fluid-dynamics mpi navier-stokes-equations parallel-computing saras
Added: 2 months ago - Last Synced: 2 months ago - Created: February 01, 2020

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  • Commits: 45
  • Committers: 1
  • Issues: 4
  • Pull Requests: 0
https://github.com/liangliangnan/easy3d

Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data - Published in JOSS (2021)
3d-modeling computer-graphics data-structure geometry-processing graph mesh opengl point-cloud polyhedral-mesh reconstruction rendering shader surface-mesh viewer visualization
Added: 2 months ago - Last Synced: 2 months ago - Created: November 28, 2018

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  • Main Language: C++
  • Commits: 3612
  • Committers: 11
  • Issues: 126
  • Pull Requests: 15
https://github.com/mpi4jax/mpi4jax

mpi4jax: Zero-copy MPI communication of JAX arrays - Published in JOSS (2021)
gpu high-performance-computing jax jit mpi parallel-computing xla
Added: 2 months ago - Last Synced: 2 months ago - Created: July 21, 2020

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  • Main Language: Python
  • Commits: 300
  • Committers: 7
  • Issues: 49
  • Pull Requests: 170
  • Owner: mpi4jax
  • Stars: 496
  • Forks: 33
  • Packages: 4
  • Downloads: 1,461
https://github.com/jessecambon/tidygeocoder

tidygeocoder: An R package for geocoding - Published in JOSS (2021)
geocoding r rspatial rstats tidyverse
Added: 2 months ago - Last Synced: 2 months ago - Created: September 19, 2019

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  • Main Language: R
  • Commits: 666
  • Committers: 9
  • Issues: 52
  • Pull Requests: 60
  • Owner: jessecambon
  • Stars: 295
  • Forks: 21
  • Packages: 3
  • Downloads: 13,950