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Open Sustainable Technology

https://github.com/raghurama123/pylifes

A graduate-level elective course: Python Programming for Life Science Students
bioinformatics biology biology-education biopython computational-biology python
Added: over 1 year ago - Last Synced: 11 months ago - Created: September 10, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 34
  • Committers: 2
  • Issues: 0
  • Pull Requests: 11
https://github.com/koeng101/dnadesign

A Go package for designing DNA.
bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology
Added: over 1 year ago - Last Synced: 11 months ago - Created: December 07, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Go
  • Commits: 477
  • Committers: 37
  • Issues: 41
  • Pull Requests: 32
  • Owner: Koeng101
  • Stars: 19
  • Forks: 0
  • Packages: 3
https://github.com/bebop/poly

A Go package for engineering organisms.
alignment bioengineering bioinformatics codon-optimizer computational-biology dna dna-barcode dna-barcoding fasta genbank genetic-engineering go golden-gate mash molecular-biology plasmids primer-design sequence-hashing synbio synthetic-biology
Added: over 1 year ago - Last Synced: over 1 year ago - Created: May 29, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Go
  • Commits: 472
  • Committers: 38
  • Issues: 53
  • Pull Requests: 55
  • Owner: bebop
  • Stars: 655
  • Forks: 68
  • Packages: 1
https://github.com/dwhswenson/contact_map

Contact map analysis for biomolecules; based on MDTraj
biochemistry bioinformatics computational-biology molecular-dynamics protein-ligand-interactions protein-protein-interaction
Added: over 1 year ago - Last Synced: 11 months ago - Created: February 08, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 483
  • Committers: 4
  • Issues: 28
  • Pull Requests: 80
  • Owner: dwhswenson
  • Stars: 38
  • Forks: 15
  • Packages: 2
  • Downloads: 98
https://github.com/poseidonchan/tape

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
bioinformatics cell-composition-analysis cell-type-specific-gene-expression-analysis computational-biology deep-learning machine-learning precision-medicine rna-seq single-cell-analysis
Added: over 1 year ago - Last Synced: 11 months ago - Created: July 15, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 102
  • Committers: 3
  • Issues: 10
  • Pull Requests: 5
  • Owner: poseidonchan
  • Stars: 42
  • Forks: 10
  • Packages: 1
  • Downloads: 146
https://github.com/klamt-lab/straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
bioinformatics cobrapy computational-biology flux-space mcs milp optcouple optknock python robustknock strain-design strain-engineering systems-biology
Added: over 1 year ago - Last Synced: 11 months ago - Created: April 26, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 643
  • Committers: 8
  • Issues: 18
  • Pull Requests: 6
  • Owner: klamt-lab
  • Stars: 33
  • Forks: 6
  • Packages: 1
  • Downloads: 338
https://github.com/isambard-uob/isambard

Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
bioinformatics computational-biology parametric-modelling python structural-biology university-of-bristol
Added: over 1 year ago - Last Synced: 11 months ago - Created: April 18, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 418
  • Committers: 5
  • Issues: 14
  • Pull Requests: 7
  • Owner: isambard-uob
  • Stars: 20
  • Forks: 7
  • Packages: 1
  • Downloads: 25