https://github.com/gibsramen/qadabra
Snakemake workflow for comparison of differential abundance ranks
https://github.com/gibsramen/qadabra
Keywords
bioinformatics differential-abundance machine-learning metagenomics microbiome pipeline snakemake workflow
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Snakemake workflow for comparison of differential abundance ranks
- Host: GitHub
- URL: https://github.com/gibsramen/qadabra
- Owner: biocore
- License: bsd-3-clause
- Created: 2022-05-04T15:55:21.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-03-22T21:58:24.000Z (about 1 year ago)
- Last Synced: 2024-04-26T05:22:55.938Z (about 1 year ago)
- Topics: bioinformatics, differential-abundance, machine-learning, metagenomics, microbiome, pipeline, snakemake, workflow
- Language: Python
- Homepage:
- Size: 15.8 MB
- Stars: 13
- Watchers: 6
- Forks: 4
- Open Issues: 11
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: biocore
- Login: biocore
- Email:
- Kind: organization
- Description: Collaboratively developed bioinformatics software.
- Website: http://biocore.github.io/
- Location: Cyberspace
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/6241857?v=4
- Repositories: 76
- Last ynced at: 2023-03-11T02:51:03.087Z
- Profile URL: https://github.com/biocore
GitHub Events
Total
- Create event: 4
- Release event: 1
- Issues event: 19
- Watch event: 6
- Member event: 1
- Issue comment event: 28
- Push event: 9
- Pull request review event: 2
- Pull request review comment event: 2
- Pull request event: 17
- Fork event: 3
Last Year
- Create event: 4
- Fork event: 3
- Issue comment event: 28
- Issues event: 19
- Member event: 1
- Pull request event: 17
- Pull request review comment event: 2
- Pull request review event: 2
- Push event: 9
- Release event: 1
- Watch event: 6
Committers metadata
Last synced: about 2 years ago
Total Commits: 60
Total Committers: 3
Avg Commits per committer: 20.0
Development Distribution Score (DDS): 0.05
| Name | Commits | |
|---|---|---|
| Gibraan Rahman | g****n@e****u | 57 |
| Yang Chen | 6****2@u****m | 2 |
| Gibs | g****n@g****m | 1 |
Committer domains:
- eng.ucsd.edu: 1
Issue and Pull Request metadata
Last synced: almost 2 years ago
Total issues: 16
Total pull requests: 23
Average time to close issues: 15 days
Average time to close pull requests: 1 day
Total issue authors: 4
Total pull request authors: 2
Average comments per issue: 0.25
Average comments per pull request: 0.0
Merged pull request: 21
Bot issues: 0
Bot pull requests: 0
Past year issues: 16
Past year pull requests: 23
Past year average time to close issues: 15 days
Past year average time to close pull requests: 1 day
Past year issue authors: 4
Past year pull request authors: 2
Past year average comments per issue: 0.25
Past year average comments per pull request: 0.0
Past year merged pull request: 21
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- gibsramen (12)
- yangchen2 (2)
- nearinj (1)
- SAlkh90-temp (1)
Top Pull Request Authors
- gibsramen (18)
- yangchen2 (5)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 8 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
- Total maintainers: 1
pypi.org: qadabra
Differential abundance workflow for microbiome data
- Homepage: https://github.com/gibsramen/qadabra
- Documentation: https://qadabra.readthedocs.io/
- Licenses: BSD-3-Clause
- Latest release: 0.3.0 (published over 1 year ago)
- Last Synced: 2024-05-27T06:21:32.285Z (12 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 8 Last month
-
Rankings:
- Dependent packages count: 6.633%
- Stargazers count: 19.483%
- Forks count: 23.201%
- Average: 26.348%
- Dependent repos count: 30.611%
- Downloads: 51.813%
- Maintainers (1)
Dependencies
- actions/checkout v2 composite
- conda-incubator/setup-miniconda v2 composite
- biom-format *
- click *
- iow *
- pandas >=1.0.0
- scikit-bio *
Score: 6.473890696352275