https://github.com/althonos/lightmotif
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
https://github.com/althonos/lightmotif
Keywords
bioinformatics genomics pssm rust-library sequence-analysis sequence-motif simd
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
- Host: GitHub
- URL: https://github.com/althonos/lightmotif
- Owner: althonos
- License: mit
- Created: 2023-04-30T20:17:01.000Z (about 2 years ago)
- Default Branch: main
- Last Pushed: 2024-03-09T12:58:02.000Z (about 1 year ago)
- Last Synced: 2024-06-09T14:13:28.120Z (11 months ago)
- Topics: bioinformatics, genomics, pssm, rust-library, sequence-analysis, sequence-motif, simd
- Language: Rust
- Homepage:
- Size: 1.97 MB
- Stars: 36
- Watchers: 4
- Forks: 2
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: COPYING
Owner metadata
- Name: Martin Larralde
- Login: althonos
- Email:
- Kind: user
- Description: PhD candidate in Bioinformatics, passionate about programming, SIMD-enthusiast, Pythonista, Rustacean. I write poems, and sometimes they are executable.
- Website:
- Location: Heidelberg, Germany
- Twitter: althonos
- Company: EMBL / LUMC, @zellerlab
- Icon url: https://avatars.githubusercontent.com/u/8660647?u=194fbf9846310fda8a9e9d1288993cc967e28ef9&v=4
- Repositories: 91
- Last ynced at: 2024-06-11T15:48:47.831Z
- Profile URL: https://github.com/althonos
GitHub Events
Total
- Release event: 5
- Watch event: 36
- Issue comment event: 8
- Push event: 114
- Pull request event: 7
- Fork event: 3
- Create event: 9
Last Year
- Create event: 5
- Fork event: 2
- Issue comment event: 7
- Pull request event: 5
- Push event: 64
- Release event: 3
- Watch event: 18
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 0
Total pull requests: 4
Average time to close issues: N/A
Average time to close pull requests: about 1 month
Total issue authors: 0
Total pull request authors: 2
Average comments per issue: 0
Average comments per pull request: 2.0
Merged pull request: 4
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 2
Past year average time to close issues: N/A
Past year average time to close pull requests: 22 days
Past year issue authors: 0
Past year pull request authors: 2
Past year average comments per issue: 0
Past year average comments per pull request: 2.0
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
Top Pull Request Authors
- striezel (3)
- workingjubilee (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 6
-
Total downloads:
- pypi: 803 last-month
- cargo: 13,117 total
- Total dependent packages: 7 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 37
- Total maintainers: 2
pypi.org: lightmotif
PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices.
- Homepage: https://github.com/althonos/lightmotif
- Documentation: https://lightmotif.readthedocs.io/
- Licenses: MIT
- Latest release: 0.6.0 (published over 1 year ago)
- Last Synced: 2024-06-11T19:10:08.057Z (11 months ago)
- Versions: 7
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 803 Last month
-
Rankings:
- Dependent packages count: 7.192%
- Stargazers count: 15.639%
- Average: 20.348%
- Forks count: 23.131%
- Dependent repos count: 35.429%
- Maintainers (1)
crates.io: lightmotif
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
- Homepage: https://github.com/althonos/lightmotif
- Documentation: https://docs.rs/lightmotif/
- Licenses: MIT
- Latest release: 0.6.0 (published over 1 year ago)
- Last Synced: 2024-06-11T19:10:10.548Z (11 months ago)
- Versions: 8
- Dependent Packages: 5
- Dependent Repositories: 0
- Downloads: 5,093 Total
-
Rankings:
- Stargazers count: 25.219%
- Dependent repos count: 28.807%
- Forks count: 30.901%
- Dependent packages count: 33.822%
- Average: 42.483%
- Downloads: 93.666%
- Maintainers (1)
crates.io: lightmotif-tfmpvalue
Rust reimplementation of TFMPvalue for the lightmotif crate.
- Homepage: https://github.com/althonos/lightmotif
- Documentation: https://docs.rs/lightmotif-tfmpvalue/
- Licenses: GPL-3.0
- Latest release: 0.6.0 (published over 1 year ago)
- Last Synced: 2024-06-11T19:10:09.820Z (11 months ago)
- Versions: 5
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 1,599 Total
-
Rankings:
- Stargazers count: 23.087%
- Dependent repos count: 28.151%
- Forks count: 30.687%
- Dependent packages count: 32.721%
- Average: 42.659%
- Downloads: 98.647%
- Maintainers (1)
crates.io: lightmotif-py
PyO3 bindings and Python interface to the lightmotif crate.
- Homepage: https://github.com/althonos/lightmotif/tree/main/lightmotif-py
- Documentation: https://docs.rs/lightmotif-py/
- Licenses: MIT
- Latest release: 0.6.0 (published over 1 year ago)
- Last Synced: 2024-06-11T19:10:08.821Z (11 months ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 2,513 Total
-
Rankings:
- Stargazers count: 25.219%
- Dependent repos count: 28.807%
- Forks count: 30.901%
- Dependent packages count: 33.822%
- Average: 42.682%
- Downloads: 94.659%
- Maintainers (1)
crates.io: lightmotif-transfac
TRANSFAC parser implementation for the lightmotif crate.
- Homepage: https://github.com/althonos/lightmotif/tree/main/lightmotif-transfac
- Documentation: https://docs.rs/lightmotif-transfac/
- Licenses: MIT
- Latest release: 0.6.0 (published over 1 year ago)
- Last Synced: 2024-06-11T19:10:09.385Z (11 months ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 2,530 Total
-
Rankings:
- Stargazers count: 25.219%
- Dependent repos count: 28.807%
- Forks count: 30.901%
- Dependent packages count: 33.822%
- Average: 42.744%
- Downloads: 94.968%
- Maintainers (1)
crates.io: lightmotif-io
Motif parsers implementation for the lightmotif crate.
- Homepage: https://github.com/althonos/lightmotif/tree/main/lightmotif-io
- Documentation: https://docs.rs/lightmotif-io/
- Licenses: MIT
- Latest release: 0.6.0 (published over 1 year ago)
- Last Synced: 2024-06-11T19:10:08.069Z (11 months ago)
- Versions: 1
- Dependent Packages: 2
- Dependent Repositories: 0
- Downloads: 1,382 Total
-
Rankings:
- Dependent repos count: 30.719%
- Dependent packages count: 36.099%
- Average: 54.937%
- Downloads: 97.993%
- Maintainers (1)
Dependencies
- actions-rs/toolchain v1 composite
- actions/checkout v3 composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v3 composite
- actions/upload-artifact v2 composite
- docker/setup-qemu-action v2 composite
- pypa/cibuildwheel v2.11.3 composite
- pypa/gh-action-pypi-publish master composite
- rasmus-saks/release-a-changelog-action v1.0.1 composite
- actions-rs/cargo v1 composite
- actions-rs/tarpaulin v0.1 composite
- actions-rs/toolchain v1 composite
- actions/cache v2 composite
- actions/checkout v3 composite
- codecov/codecov-action v3 composite
- rasmus-saks/release-a-changelog-action v1.0.1 composite
- bio 1.1.0 development
- ipython *
- nbsphinx *
- pygments *
- pygments-style-monokailight *
- recommonmark *
- semantic_version *
- setuptools >=46.4
Score: -Infinity