Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/gregor-mendel-institute/aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
arabidopsis-thaliana deep-learning nextflow plant-phenotyping scikit-image semantic-segmentation tensorflow
Added: about 1 year ago - Last Synced: 11 months ago - Created: February 13, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits:
  • Committers:
  • Issues: 16
  • Pull Requests: 49
https://github.com/xiaoli-dong/pathogenseq

Pathogen whole genome sequence (WGS) data analysis pipeline
amr assembly capsular-typing emm-typing illumina mlst nanopore ngs pathogen plasmid serotyping taxonomy virulome
Added: over 1 year ago - Last Synced: 11 months ago - Created: June 28, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits: 151
  • Committers: 5
  • Issues: 1
  • Pull Requests: 0
https://github.com/nf-core/bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
bacteria bacterial bacterial-genome-analysis genomics mapping nextflow nf-core phylogeny pipeline tree workflow
Added: over 1 year ago - Last Synced: 11 months ago - Created: June 09, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits: 225
  • Committers: 8
  • Issues: 25
  • Pull Requests: 42
  • Owner: nf-core
  • Stars: 48
  • Forks: 27
  • Packages: 0
https://github.com/norwegianveterinaryinstitute/alppaca

A tooL for Prokaryotic Phylogeny And Clustering Analysis
clustering nextflow phylogeny pipeline
Added: over 1 year ago - Last Synced: 11 months ago - Created: August 14, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits: 525
  • Committers: 4
  • Issues: 84
  • Pull Requests: 84
https://github.com/cdcgov/bpertussis-ciwgs

Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline 🧪🧬🖥️
bioinformatics genomic-surveillance nextflow pertussis wgs
Added: over 1 year ago - Last Synced: 11 months ago - Created: November 20, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits: 15
  • Committers: 2
  • Issues: 0
  • Pull Requests: 1
  • Owner: CDCgov
  • Stars: 0
  • Forks: 0
  • Packages: 0