https://github.com/gregor-mendel-institute/aradeepopsis
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
https://github.com/gregor-mendel-institute/aradeepopsis
Keywords
arabidopsis-thaliana deep-learning nextflow plant-phenotyping scikit-image semantic-segmentation tensorflow
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
- Host: GitHub
- URL: https://github.com/gregor-mendel-institute/aradeepopsis
- Owner: Gregor-Mendel-Institute
- License: gpl-3.0
- Created: 2020-02-13T15:00:47.000Z (about 5 years ago)
- Default Branch: master
- Last Pushed: 2022-11-07T16:40:50.000Z (over 2 years ago)
- Last Synced: 2024-05-08T06:31:46.791Z (about 1 year ago)
- Topics: arabidopsis-thaliana, deep-learning, nextflow, plant-phenotyping, scikit-image, semantic-segmentation, tensorflow
- Language: Nextflow
- Homepage:
- Size: 2.75 MB
- Stars: 40
- Watchers: 6
- Forks: 9
- Open Issues: 3
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata
- Name: GMI: Gregor Mendel Institute of Molecular Plant Biology GmbH
- Login: Gregor-Mendel-Institute
- Email: [email protected]
- Kind: organization
- Description:
- Website: www.gmi.oeaw.ac.at
- Location: Vienna, Austria
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/2705885?v=4
- Repositories: 65
- Last ynced at: 2024-03-26T21:06:37.366Z
- Profile URL: https://github.com/Gregor-Mendel-Institute
GitHub Events
Total
- Create event: 26
- Release event: 7
- Issues event: 23
- Watch event: 41
- Delete event: 17
- Member event: 1
- Issue comment event: 50
- Push event: 136
- Public event: 1
- Pull request review comment event: 2
- Pull request event: 43
- Fork event: 10
Last Year
- Fork event: 1
- Watch event: 3
Issue and Pull Request metadata
Last synced: about 1 year ago
Total issues: 16
Total pull requests: 49
Average time to close issues: 26 days
Average time to close pull requests: 13 days
Total issue authors: 9
Total pull request authors: 3
Average comments per issue: 3.13
Average comments per pull request: 0.14
Merged pull request: 41
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: about 5 hours
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 2.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- phue (5)
- dschneiderch (4)
- bisnow33 (1)
- greymonroe (1)
- G-Thomson (1)
- LeryLee (1)
- marlenen1 (1)
- nschan (1)
- sarahmermet (1)
Top Pull Request Authors
- phue (38)
- nschan (10)
- timeu (1)
Top Issue Labels
- enhancement (2)
- wontfix (1)
- bug (1)
Top Pull Request Labels
Package metadata
- Total packages: 2
- Total downloads: unknown
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 4
proxy.golang.org: github.com/gregor-mendel-institute/aradeepopsis
- Homepage:
- Documentation: https://pkg.go.dev/github.com/gregor-mendel-institute/aradeepopsis#section-documentation
- Licenses: gpl-3.0
- Latest release: v1.3.1 (published almost 4 years ago)
- Last Synced: 2024-06-07T15:00:30.938Z (11 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 9.049%
- Average: 9.627%
- Dependent repos count: 10.204%
proxy.golang.org: github.com/Gregor-Mendel-Institute/aradeepopsis
- Homepage:
- Documentation: https://pkg.go.dev/github.com/Gregor-Mendel-Institute/aradeepopsis#section-documentation
- Licenses: gpl-3.0
- Latest release: v1.3.1 (published almost 4 years ago)
- Last Synced: 2024-06-07T20:41:43.806Z (11 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 9.049%
- Average: 9.627%
- Dependent repos count: 10.204%
Dependencies
- imagemagick 7.1.0_33.*
- scikit-image 0.19.2.*
- tensorflow-base 2.7.1.*
- r-base 4.1.3.*
- r-corrplot 0.92.*
- r-jpeg 0.1_9.*
- r-radarchart 0.3.1.*
- r-shiny 1.7.1.*
- r-shinycssloaders 1.0.0.*
- r-slickr 0.5.0.*
- r-tidyverse 1.3.1.*
- actions/checkout v2 composite
- actions/checkout v2 composite
- actions/checkout v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- pip 21.1.1.*
- python 3.7.*
- mambaorg/micromamba 0.13.0 build
- mambaorg/micromamba 0.13.0 build
- mambaorg/micromamba 0.13.0 build
Score: -Infinity