https://github.com/gregor-mendel-institute/aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
https://github.com/gregor-mendel-institute/aradeepopsis

Keywords

arabidopsis-thaliana deep-learning nextflow plant-phenotyping scikit-image semantic-segmentation tensorflow

Last synced: 11 months ago
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Acceptance Criteria

Repository metadata

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images


Owner metadata


GitHub Events

Total
Last Year

Issue and Pull Request metadata

Last synced: about 1 year ago

Total issues: 16
Total pull requests: 49
Average time to close issues: 26 days
Average time to close pull requests: 13 days
Total issue authors: 9
Total pull request authors: 3
Average comments per issue: 3.13
Average comments per pull request: 0.14
Merged pull request: 41
Bot issues: 0
Bot pull requests: 0

Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: about 5 hours
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 2.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/gregor-mendel-institute/aradeepopsis

Top Issue Authors

  • phue (5)
  • dschneiderch (4)
  • bisnow33 (1)
  • greymonroe (1)
  • G-Thomson (1)
  • LeryLee (1)
  • marlenen1 (1)
  • nschan (1)
  • sarahmermet (1)

Top Pull Request Authors

  • phue (38)
  • nschan (10)
  • timeu (1)

Top Issue Labels

  • enhancement (2)
  • wontfix (1)
  • bug (1)

Top Pull Request Labels


Package metadata

proxy.golang.org: github.com/gregor-mendel-institute/aradeepopsis

proxy.golang.org: github.com/Gregor-Mendel-Institute/aradeepopsis


Dependencies

containers/base/environment.yml conda
  • imagemagick 7.1.0_33.*
  • scikit-image 0.19.2.*
  • tensorflow-base 2.7.1.*
containers/shiny/environment.yml conda
  • r-base 4.1.3.*
  • r-corrplot 0.92.*
  • r-jpeg 0.1_9.*
  • r-radarchart 0.3.1.*
  • r-shiny 1.7.1.*
  • r-shinycssloaders 1.0.0.*
  • r-slickr 0.5.0.*
  • r-tidyverse 1.3.1.*
.github/workflows/docker_base.yml actions
  • actions/checkout v2 composite
.github/workflows/docker_dpp.yml actions
  • actions/checkout v2 composite
.github/workflows/docker_shiny.yml actions
  • actions/checkout v2 composite
.github/workflows/minimal_test.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • actions/upload-artifact v2 composite
containers/addons/dpp/environment.yml conda
  • pip 21.1.1.*
  • python 3.7.*
containers/addons/dpp/Dockerfile docker
  • mambaorg/micromamba 0.13.0 build
containers/base/Dockerfile docker
  • mambaorg/micromamba 0.13.0 build
containers/shiny/Dockerfile docker
  • mambaorg/micromamba 0.13.0 build

Score: -Infinity