https://github.com/jlsteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
bioinformatics
evolution
evolutionary-biology
genomics
orthology
orthology-assignments
orthology-inference
phylogenetics
phylogenomics
python
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: February 28, 2021
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 108
- Committers: 2
- Issues: 8
- Pull Requests: 4
- Owner: JLSteenwyk
- Stars: 19
- Forks: 1
- Packages: 1
- Downloads: 81
https://github.com/tusharhero/darwinio
Evolution Simulator
evolution
neural-network
organisms
simulation
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: April 07, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 238
- Committers: 6
- Issues: 5
- Pull Requests: 11
- Owner: tusharhero
- Stars: 19
- Forks: 7
- Packages: 1
- Downloads: 151
https://github.com/jlsteenwyk/phykit
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
bioinformatics
evolution
evolutionary-biology
genomics
multiple-sequence-alignments
phylogenetics
phylogenomics
python
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: May 12, 2020
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 343
- Committers: 8
- Issues: 4
- Pull Requests: 19
- Owner: JLSteenwyk
- Stars: 53
- Forks: 7
- Packages: 1
- Downloads: 377
https://github.com/jlsteenwyk/biokit
a versatile toolkit for processing and analyzing diverse types of sequence data
bioinformatics
comparative-genomics
evolution
evolutionary-biology
evolutionary-genomics
genomics
python
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: August 04, 2021
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 157
- Committers: 2
- Issues: 1
- Pull Requests: 4
- Owner: JLSteenwyk
- Stars: 20
- Forks: 9
- Packages: 1
- Downloads: 183
https://github.com/jlsteenwyk/clipkit
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
bioinformatics
evolution
evolutionary-biology
genomics
phylogenetics
phylogenomics
python
systematics
Added: over 1 year ago - Last Synced: about 1 year ago
- Created: April 11, 2020
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 266
- Committers: 8
- Issues: 17
- Pull Requests: 35
- Owner: JLSteenwyk
- Stars: 54
- Forks: 4
- Packages: 1
- Downloads: 480