https://github.com/nadeemlab/spt
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
https://github.com/nadeemlab/spt
Keywords
biomarker-discovery clinical-workflow image-analysis python single-cell-analysis spatial-analysis tumor-microenvironment
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
- Host: GitHub
- URL: https://github.com/nadeemlab/spt
- Owner: nadeemlab
- License: other
- Created: 2021-05-25T15:57:33.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2024-06-12T03:56:12.000Z (11 months ago)
- Last Synced: 2024-06-12T04:57:57.225Z (11 months ago)
- Topics: biomarker-discovery, clinical-workflow, image-analysis, python, single-cell-analysis, spatial-analysis, tumor-microenvironment
- Language: Python
- Homepage: https://oncopathtk.org
- Size: 22.7 MB
- Stars: 22
- Watchers: 4
- Forks: 2
- Open Issues: 13
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
Owner metadata
- Name: Nadeem Lab @ Memorial Sloan Kettering Cancer Center
- Login: nadeemlab
- Email: [email protected]
- Kind: organization
- Description: Integrative Biomedical Data Analysis Lab (macro: radiology/surgery + meso: pathology + micro: molecular)
- Website: https://nadeemlab.org/
- Location: New York, NY
- Twitter: nadeem_lab
- Company:
- Icon url: https://avatars.githubusercontent.com/u/82060114?v=4
- Repositories: 7
- Last ynced at: 2023-03-05T10:39:53.999Z
- Profile URL: https://github.com/nadeemlab
Committers metadata
Last synced: about 1 year ago
Total Commits: 2,057
Total Committers: 9
Avg Commits per committer: 228.556
Development Distribution Score (DDS): 0.422
Commits in past year: 185
Committers in past year: 7
Avg Commits per committer in past year: 26.429
Development Distribution Score (DDS) in past year: 0.611
| Name | Commits | |
|---|---|---|
| James Mathews | m****l@j****g | 1189 |
| Jimmy Mathews | m****2@m****g | 816 |
| Carlin Liao | l****2@m****g | 30 |
| Carlin Liao | c****o@g****m | 8 |
| Grigory Frantsuzov | g****v@q****m | 5 |
| Saad Nadeem | m****0@g****m | 4 |
| Mathews Jr | m****2@l****m | 2 |
| danjafish | 3****h | 2 |
| Grigory Frantsuzov | w****w | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 103
Total pull requests: 100
Average time to close issues: 29 days
Average time to close pull requests: 5 days
Total issue authors: 3
Total pull request authors: 4
Average comments per issue: 2.52
Average comments per pull request: 4.17
Merged pull request: 97
Bot issues: 0
Bot pull requests: 0
Past year issues: 103
Past year pull requests: 100
Past year average time to close issues: 29 days
Past year average time to close pull requests: 5 days
Past year issue authors: 3
Past year pull request authors: 4
Past year average comments per issue: 2.52
Past year average comments per pull request: 4.17
Past year merged pull request: 97
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- jimmymathews (52)
- CarlinLiao (50)
- sanadeem (1)
Top Pull Request Authors
- CarlinLiao (50)
- jimmymathews (46)
- wooferclaw (3)
- franciscouzo (1)
Top Issue Labels
- bug (35)
- enhancement (33)
- refactor (23)
- feature (13)
- wontimplement (8)
- development (3)
- documentation (3)
- duplicate (2)
- wontfix (1)
Top Pull Request Labels
- enhancement (18)
- refactor (16)
- feature (9)
- bug (6)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 268 last-month
- Total dependent packages: 1
- Total dependent repositories: 1
- Total versions: 90
- Total maintainers: 1
pypi.org: spatialprofilingtoolbox
Toolbox for spatial analysis of single cell data.
- Homepage:
- Documentation: https://spatialprofilingtoolbox.readthedocs.io/
- Licenses: other
- Latest release: 0.23.3 (published 12 months ago)
- Last Synced: 2024-06-11T12:59:13.426Z (11 months ago)
- Versions: 90
- Dependent Packages: 1
- Dependent Repositories: 1
- Downloads: 268 Last month
-
Rankings:
- Dependent packages count: 4.759%
- Downloads: 11.432%
- Average: 12.604%
- Dependent repos count: 21.62%
- Maintainers (1)
Dependencies
- fastapi >=0.68.0,<0.69.0
- psycopg2-binary ==2.9.3
- uvicorn >=0.15.0,<0.16.0
- Jinja2 ==3.0.1
- numpy ==1.22.3
- pandas >=1.1.5
- plotly ==5.1.0
- psycopg2-binary ==2.9.3
- pyshp ==2.2.0
- scikit-learn ==0.24.1
- scipy ==1.8.0
- tabulate ==0.8.9
Score: 11.354691459705334