https://github.com/jlsteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
https://github.com/jlsteenwyk/orthosnap
Keywords
bioinformatics evolution evolutionary-biology genomics orthology orthology-assignments orthology-inference phylogenetics phylogenomics python
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
- Host: GitHub
- URL: https://github.com/jlsteenwyk/orthosnap
- Owner: JLSteenwyk
- License: mit
- Created: 2021-02-28T13:55:43.000Z (about 4 years ago)
- Default Branch: master
- Last Pushed: 2023-12-20T21:13:43.000Z (over 1 year ago)
- Last Synced: 2024-04-25T18:22:39.339Z (about 1 year ago)
- Topics: bioinformatics, evolution, evolutionary-biology, genomics, orthology, orthology-assignments, orthology-inference, phylogenetics, phylogenomics, python
- Language: Python
- Homepage: https://jlsteenwyk.com/orthosnap/
- Size: 112 MB
- Stars: 19
- Watchers: 4
- Forks: 1
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE.md
Owner metadata
- Name: Jacob L. Steenwyk
- Login: JLSteenwyk
- Email:
- Kind: user
- Description: Berkeley Science Fellow and Postdoctoral Scholar. Evolutionary genomics and software development.
- Website: https://jlsteenwyk.com
- Location: Berkeley, CA
- Twitter: JLSteenwyk
- Company: University of California, Berkeley
- Icon url: https://avatars.githubusercontent.com/u/17225603?u=370657f310a69a5facb58b2d8e3a0ef1e7fdd1ac&v=4
- Repositories: 10
- Last ynced at: 2023-03-06T17:39:56.653Z
- Profile URL: https://github.com/JLSteenwyk
GitHub Events
Total
- Create event: 16
- Release event: 4
- Issues event: 17
- Watch event: 20
- Delete event: 10
- Issue comment event: 37
- Public event: 1
- Push event: 80
- Pull request event: 8
- Fork event: 2
Last Year
- Create event: 7
- Delete event: 2
- Issue comment event: 28
- Issues event: 9
- Pull request event: 8
- Push event: 21
- Release event: 4
- Watch event: 4
Committers metadata
Last synced: over 1 year ago
Total Commits: 108
Total Committers: 2
Avg Commits per committer: 54.0
Development Distribution Score (DDS): 0.037
Commits in past year: 11
Committers in past year: 1
Avg Commits per committer in past year: 11.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Jacob L. Steenwyk | j****k@g****m | 104 |
| Jacob L Steenwyk | j****k@J****l | 4 |
Committer domains:
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 8
Total pull requests: 4
Average time to close issues: 25 days
Average time to close pull requests: less than a minute
Total issue authors: 7
Total pull request authors: 1
Average comments per issue: 4.63
Average comments per pull request: 0.0
Merged pull request: 4
Bot issues: 0
Bot pull requests: 0
Past year issues: 5
Past year pull requests: 4
Past year average time to close issues: 23 days
Past year average time to close pull requests: less than a minute
Past year issue authors: 4
Past year pull request authors: 1
Past year average comments per issue: 6.4
Past year average comments per pull request: 0.0
Past year merged pull request: 4
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- hanxiaoxu1110 (2)
- alexvasilikop (1)
- Andyargueasae (1)
- drabe004 (1)
- evelinepinseel (1)
- Mia1349 (1)
- yuemeanshappy (1)
Top Pull Request Authors
- JLSteenwyk (4)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 81 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 9
- Total maintainers: 1
pypi.org: orthosnap
orthosnap, identify orthologous subgroups of genes in large orthologous groups of genes.
- Homepage: https://github.com/jlsteenwyk/orthosnap
- Documentation: https://orthosnap.readthedocs.io/
- Licenses: mit
- Latest release: 1.3.0 (published over 1 year ago)
- Last Synced: 2024-06-03T22:47:09.844Z (11 months ago)
- Versions: 9
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 81 Last month
-
Rankings:
- Dependent packages count: 10.082%
- Stargazers count: 14.502%
- Average: 17.39%
- Downloads: 18.131%
- Dependent repos count: 21.62%
- Forks count: 22.613%
- Maintainers (1)
Dependencies
- sphinx-autobuild * develop
- Pygments *
- Sphinx *
- sphinx_rtd_theme *
- alabaster ==0.7.12 develop
- babel ==2.8.0 develop
- certifi ==2020.6.20 develop
- chardet ==3.0.4 develop
- docutils ==0.16 develop
- idna ==2.10 develop
- imagesize ==1.2.0 develop
- jinja2 ==2.11.2 develop
- livereload ==2.6.3 develop
- markupsafe ==1.1.1 develop
- packaging ==20.4 develop
- pygments ==2.7.2 develop
- pyparsing ==2.4.7 develop
- pytz ==2020.1 develop
- requests ==2.24.0 develop
- six ==1.15.0 develop
- snowballstemmer ==2.0.0 develop
- sphinx ==3.2.1 develop
- sphinx-autobuild ==2020.9.1 develop
- sphinxcontrib-applehelp ==1.0.2 develop
- sphinxcontrib-devhelp ==1.0.2 develop
- sphinxcontrib-htmlhelp ==1.0.3 develop
- sphinxcontrib-jsmath ==1.0.1 develop
- sphinxcontrib-qthelp ==1.0.3 develop
- sphinxcontrib-serializinghtml ==1.1.4 develop
- tornado ==6.1 develop
- urllib3 ==1.25.11 develop
- alabaster ==0.7.12
- babel ==2.8.0
- certifi ==2020.6.20
- chardet ==3.0.4
- docutils ==0.16
- idna ==2.10
- imagesize ==1.2.0
- jinja2 ==2.11.2
- markupsafe ==1.1.1
- packaging ==20.4
- pygments ==2.7.2
- pyparsing ==2.4.7
- pytz ==2020.1
- requests ==2.24.0
- six ==1.15.0
- snowballstemmer ==2.0.0
- sphinx ==3.2.1
- sphinx-rtd-theme ==0.5.0
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==1.0.3
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.4
- urllib3 ==1.25.11
- biopython ==1.78
- numpy ==1.20.1
- tqdm ==4.58.0
- JamesIves/github-pages-deploy-action releases/v3 composite
- actions/checkout master composite
- actions/setup-python master composite
- codecov/codecov-action v1.0.7 composite
- dschep/install-pipenv-action v1 composite
Score: 8.056426767522984