Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/akikuno/cstag

cstag and cstag-cli: tools for manipulating and visualizing cs tags - Published in JOSS (2024)
bioinformatics cstag minimap2 python sam sequence
Added: 8 months ago - Last Synced: 8 months ago - Created: March 12, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 248
  • Committers: 2
  • Issues: 12
  • Pull Requests: 16
  • Owner: akikuno
  • Stars: 10
  • Forks: 0
  • Packages: 1
  • Downloads: 1,379
https://github.com/alejandrojuria/tightbinder

tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids - Published in JOSS (2024)
alloys band-structure condensed-matter-physics dft-fit disorder electronic-structure physics python simulation slater-koster solid-state-physics tight-binding topology
Added: 8 months ago - Last Synced: 8 months ago - Created: May 26, 2020

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 401
  • Committers: 4
  • Issues: 8
  • Pull Requests: 6
https://github.com/deeprank/deeprank2

DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning - Published in JOSS (2024)
convolutional-neural-networks deep-learning graph-neural-networks protein-protein-interfaces pytorch single-residue-variants structural-biology
Added: 8 months ago - Last Synced: 8 months ago - Created: January 21, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 3021
  • Committers: 35
  • Issues: 137
  • Pull Requests: 147
  • Owner: DeepRank
  • Stars: 55
  • Forks: 14
  • Packages: 1
  • Downloads: 70
https://github.com/nansencenter/dapper

DAPPER: Data Assimilation with Python: a Package for Experimental Research - Published in JOSS (2024)
bayesian-filter bayesian-methods chaos data-assimilation enkf kalman kalman-filtering particle-filter state-estimation
Added: 8 months ago - Last Synced: 8 months ago - Created: July 04, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1649
  • Committers: 7
  • Issues: 73
  • Pull Requests: 33
  • Owner: nansencenter
  • Stars: 386
  • Forks: 130
  • Packages: 2
  • Downloads: 878
https://github.com/fabianplum/omnitrax

OmniTrax: A deep learning-driven multi-animal tracking and pose-estimation add-on for Blender - Published in JOSS (2024)
blender deeplabcut deeplearning object-detection tracking yolo
Added: 8 months ago - Last Synced: 8 months ago - Created: November 08, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 360
  • Committers: 1
  • Issues: 43
  • Pull Requests: 2
  • Owner: FabianPlum
  • Stars: 38
  • Forks: 4
  • Packages: 0
https://github.com/utel-uiuc/gtfs_segments

GTFS Segments: A Fast and Efficient Library to Generate Bus Stop Spacings - Published in JOSS (2024)
bus distribution gtfs-feed python stop transit transit-data
Added: 8 months ago - Last Synced: 8 months ago - Created: June 06, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 204
  • Committers: 3
  • Issues: 6
  • Pull Requests: 17
  • Owner: UTEL-UIUC
  • Stars: 46
  • Forks: 3
  • Packages: 3
  • Downloads: 597
https://github.com/mreye-lumc/zospy

ZOSPy: optical ray tracing in Python through OpticStudio - Published in JOSS (2024)
optics optics-simulation opticstudio python zemax zos-api
Added: 8 months ago - Last Synced: 8 months ago - Created: September 06, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 248
  • Committers: 9
  • Issues: 21
  • Pull Requests: 201
  • Owner: MREYE-LUMC
  • Stars: 77
  • Forks: 17
  • Packages: 1
  • Downloads: 520
https://github.com/toloka/crowd-kit

Learning from Crowds with Crowd-Kit - Published in JOSS (2024)
aggregations annotation crowd crowdsourcing data-mining data-science labeling python quality-control toloka truth-inference
Added: 8 months ago - Last Synced: 8 months ago - Created: March 01, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 376
  • Committers: 28
  • Issues: 26
  • Pull Requests: 127
  • Owner: Toloka
  • Stars: 233
  • Forks: 19
  • Packages: 1
  • Downloads: 5,565
https://github.com/cement-psaap/mcdc

Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development - Published in JOSS (2024)
high-performance-computing monte-carlo-simulation neutron-transport neutronics nuclear-engineering parallel particle-transport python radiation-transport simulation
Added: 8 months ago - Last Synced: 8 months ago - Created: February 25, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1027
  • Committers: 28
  • Issues: 92
  • Pull Requests: 192
  • Owner: CEMeNT-PSAAP
  • Stars: 45
  • Forks: 27
  • Packages: 1
  • Downloads: 48
https://github.com/cosmoglobe/zodipy

ZodiPy: A Python package for zodiacal light simulations - Published in JOSS (2024)
astronomy astropy-affiliated infrared-astronomy interplanetary-dust python simulation-physics simulations zodiacal-light
Added: 8 months ago - Last Synced: 8 months ago - Created: August 11, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 486
  • Committers: 6
  • Issues: 29
  • Pull Requests: 37
  • Owner: Cosmoglobe
  • Stars: 12
  • Forks: 10
  • Packages: 2
  • Downloads: 209
https://github.com/nicoudart/pybwe

PyBWE: Python tools for Bandwidth Extrapolation of planetary radar signals - Published in JOSS (2024)
astronomy astrophysics bandwidth bwe extrapolation planetary-science pybwe radar resolution sounder
Added: 8 months ago - Last Synced: 8 months ago - Created: November 27, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 158
  • Committers: 1
  • Issues: 6
  • Pull Requests: 0
  • Owner: NicOudart
  • Stars: 6
  • Forks: 0
  • Packages: 1
  • Downloads: 67
https://github.com/mcgalcode/pylattica

pylattica: a package for prototyping lattice models in chemistry and materials science - Published in JOSS (2024)
chemistry lattice materials-science simulation
Added: 8 months ago - Last Synced: 8 months ago - Created: March 10, 2022

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 218
  • Committers: 3
  • Issues: 5
  • Pull Requests: 6
  • Owner: mcgalcode
  • Stars: 10
  • Forks: 2
  • Packages: 1
  • Downloads: 97
https://github.com/jgcri/tethys

Tethys: A Spatiotemporal Downscaling Model for Global Water Demand - Published in JOSS (2024)
gcam gcims
Added: 8 months ago - Last Synced: 8 months ago - Created: September 22, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 433
  • Committers: 9
  • Issues: 27
  • Pull Requests: 48
  • Owner: JGCRI
  • Stars: 28
  • Forks: 12
  • Packages: 1
  • Downloads: 11
https://github.com/simulation-decomposition/simdec-python

Simulation Decomposition in Python - Published in JOSS (2024)
computational-modeling sensitivity-analysis uncertainty visualization
Added: 8 months ago - Last Synced: 8 months ago - Created: April 20, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 230
  • Committers: 2
  • Issues: 36
  • Pull Requests: 5
https://github.com/soundata/soundata

Soundata: Reproducible use of audio datasets - Published in JOSS (2024)
audio bioacoustics dataset environmental-sound python urban-sound
Added: 8 months ago - Last Synced: 8 months ago - Created: March 02, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 829
  • Committers: 30
  • Issues: 78
  • Pull Requests: 174
  • Owner: soundata
  • Stars: 345
  • Forks: 27
  • Packages: 1
  • Downloads: 3,094
https://github.com/ericfell/rfbzero

RFBzero: A Python package for zero-dimensional simulation of redox flow battery cycling - Published in JOSS (2024)
batteries battery-models microkinetics python rfbzero simulation
Added: 8 months ago - Last Synced: 8 months ago - Created: July 17, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 278
  • Committers: 2
  • Issues: 6
  • Pull Requests: 40
  • Owner: ericfell
  • Stars: 8
  • Forks: 2
  • Packages: 1
  • Downloads: 28
https://github.com/sourmash-bio/sourmash

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets - Published in JOSS (2024)
bioinformatics fracminhash hacktoberfest kmer minhash python rust scaled-minhash sketching sourmash taxonomic-classification taxonomic-profiling
Added: 8 months ago - Last Synced: 8 months ago - Created: April 09, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2136
  • Committers: 47
  • Issues: 607
  • Pull Requests: 1251
  • Owner: sourmash-bio
  • Stars: 524
  • Forks: 88
  • Packages: 4
  • Downloads: 56,689
https://github.com/jeertmans/differt2d

DiffeRT2d: A Differentiable Ray Tracing Python Framework for Radio Propagation - Published in JOSS (2024)
2d differentiable raytracing telecommunications
Added: 8 months ago - Last Synced: 8 months ago - Created: May 10, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 372
  • Committers: 6
  • Issues: 7
  • Pull Requests: 134
  • Owner: jeertmans
  • Stars: 14
  • Forks: 0
  • Packages: 1
  • Downloads: 89
https://github.com/ehsangharibnezhad/telescopeml

TelescopeML -- I. An End-to-End Python Package for Interpreting Telescope Datasets through Training Machine Learning Models, Generating Statistical Reports, and Visualizing Results - Published in JOSS (2024)
astronomy atmospheric-modelling convolutional-neural-networks machine-learning star telescope
Added: 8 months ago - Last Synced: 8 months ago - Created: June 19, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 421
  • Committers: 3
  • Issues: 0
  • Pull Requests: 155
https://github.com/astcherbinine/omegapy

OMEGA-Py: Python Tools for OMEGA Data - Published in JOSS (2024)
astronomy physics planetary-science python3
Added: 8 months ago - Last Synced: 8 months ago - Created: March 20, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 273
  • Committers: 3
  • Issues: 9
  • Pull Requests: 6
  • Owner: AStcherbinine
  • Stars: 12
  • Forks: 2
  • Packages: 1
  • Downloads: 111
https://github.com/cm2s/piglot

piglot: an Open-source Package for Derivative-free Optimisation of Numerical Responses - Published in JOSS (2024)
bayesian-optimization optimisation parameter-identification physics-solvers python
Added: 8 months ago - Last Synced: 8 months ago - Created: March 15, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 55
  • Committers: 5
  • Issues: 4
  • Pull Requests: 82
  • Owner: CM2S
  • Stars: 19
  • Forks: 4
  • Packages: 1
  • Downloads: 56
https://github.com/mnets/pymnet

pymnet: A Python Library for Multilayer Networks - Published in JOSS (2024)
multilayer-networks network-analysis python
Added: 8 months ago - Last Synced: 8 months ago - Created: June 29, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 574
  • Committers: 10
  • Issues: 43
  • Pull Requests: 10
  • Owner: mnets
  • Stars: 152
  • Forks: 26
  • Packages: 1
  • Downloads: 931
https://github.com/paucablop/chemotools

chemotools: A Python Package that Integrates Chemometrics and scikit-learn - Published in JOSS (2024)
artificial-intelligence autoencoders chemometrics deep-learning hacktoberfest ir-spectroscopy machine-learning multivariate-analysis nir-spectroscopy python raman-spectroscopy scikit-learn sklearn spectra spectroscopy
Added: 8 months ago - Last Synced: 8 months ago - Created: January 26, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 517
  • Committers: 3
  • Issues: 57
  • Pull Requests: 212
  • Owner: paucablop
  • Stars: 63
  • Forks: 10
  • Packages: 1
  • Downloads: 1,895
https://github.com/cosima/regional-mom6

regional-mom6: A Python package for automatic generation of regional configurations for the Modular Ocean Model 6 - Published in JOSS (2024)
mom6 ocean-modelling python regional-model
Added: 8 months ago - Last Synced: 8 months ago - Created: August 15, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 448
  • Committers: 8
  • Issues: 84
  • Pull Requests: 217
  • Owner: COSIMA
  • Stars: 29
  • Forks: 19
  • Packages: 1
  • Downloads: 150
https://github.com/radicamc/exotedrf

exoTEDRF: An EXOplanet Transit and Eclipse Data Reduction Framework - Published in JOSS (2024)
atmosphere exoplanet jwst miri niriss nirspec soss spectroscopy teddorf
Added: 8 months ago - Last Synced: 8 months ago - Created: March 08, 2024

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 643
  • Committers: 5
  • Issues: 23
  • Pull Requests: 39
  • Owner: radicamc
  • Stars: 2
  • Forks: 5
  • Packages: 1
  • Downloads: 178
https://github.com/jingxuan97/nemesispy

NEMESISPY: A Python package for simulating and retrieving exoplanetary spectra - Published in JOSS (2024)
exoplanet-analysis exoplanet-atmospheres exoplanets radiative-transfer
Added: 8 months ago - Last Synced: 8 months ago - Created: September 29, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 239
  • Committers: 4
  • Issues: 6
  • Pull Requests: 1
  • Owner: Jingxuan97
  • Stars: 11
  • Forks: 2
  • Packages: 0
https://github.com/rwth-ebc/filip

FiLiP: A python software development kit (SDK) for accelerating the development of services based on FIWARE IoT platform - Published in JOSS (2024)
fiware fiware-iot-agents fiware-ngsi-v2 fiware-orion fiware-quantum-leap hacktoberfest iot maintained python tool
Added: 8 months ago - Last Synced: 8 months ago - Created: May 26, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2239
  • Committers: 42
  • Issues: 190
  • Pull Requests: 272
  • Owner: RWTH-EBC
  • Stars: 24
  • Forks: 15
  • Packages: 1
  • Downloads: 1,486
https://github.com/scverse/anndata

anndata: Access and store annotated data matrices - Published in JOSS (2024)
anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics
Added: 8 months ago - Last Synced: 8 months ago - Created: August 11, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1543
  • Committers: 56
  • Issues: 389
  • Pull Requests: 1388
  • Owner: scverse
  • Stars: 667
  • Forks: 175
  • Packages: 1
  • Downloads: 962,749
https://github.com/ekiefl/pooltool

Pooltool: A Python package for realistic billiards simulation - Published in JOSS (2024)
billiards eight-ball panda3d physics pool python simulation snooker
Added: 8 months ago - Last Synced: 8 months ago - Created: April 09, 2020

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1863
  • Committers: 10
  • Issues: 54
  • Pull Requests: 249
  • Owner: ekiefl
  • Stars: 297
  • Forks: 54
  • Packages: 1
  • Downloads: 2,171
https://github.com/ckdckd145/statmanager-kr

Statmanager-kr: A User-friendly Statistical Package for Python in Pandas - Published in JOSS (2024)
clinical-trials correlation-analysis easy-to-use null-hypothesis pandas pandas-python posthoc-comparisons research social-science statistical-analysis statistical-methods statistical-tests statistics ttest user-friendly visualize-differences visualizes-data
Added: 8 months ago - Last Synced: 8 months ago - Created: November 30, 2023

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 199
  • Committers: 4
  • Issues: 3
  • Pull Requests: 10
  • Owner: ckdckd145
  • Stars: 10
  • Forks: 4
  • Packages: 1
  • Downloads: 731
https://github.com/brocklab/pycashier

Pycashier: cash in on DNA barcode tags - Published in JOSS (2024)
bioinformatics pipeline
Added: 8 months ago - Last Synced: 8 months ago - Created: May 11, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 297
  • Committers: 3
  • Issues: 26
  • Pull Requests: 16
  • Owner: brocklab
  • Stars: 3
  • Forks: 3
  • Packages: 2
  • Downloads: 143
https://github.com/isce-framework/dolphin

Dolphin: A Python package for large-scale InSAR PS/DS processing - Published in JOSS (2024)
deformation geoscience geospatial-processing insar phase-linking remote-sensing squeesar time-series
Added: 8 months ago - Last Synced: 8 months ago - Created: July 21, 2022

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 868
  • Committers: 8
  • Issues: 105
  • Pull Requests: 737
  • Owner: isce-framework
  • Stars: 105
  • Forks: 28
  • Packages: 1
  • Downloads: 506
https://github.com/dodge-research-group/thztools

THzTools: data analysis software for terahertz time-domain spectroscopy - Published in JOSS (2024)
condensed-matter-physics data-analysis optics spectroscopy terahertz time-domain
Added: 8 months ago - Last Synced: 8 months ago - Created: November 22, 2022

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 812
  • Committers: 10
  • Issues: 18
  • Pull Requests: 60
https://github.com/ks905383/xagg

xagg: A Python package to aggregate gridded data onto polygons - Published in JOSS (2024)
aggregation polygon python raster-data xarray
Added: 8 months ago - Last Synced: 8 months ago - Created: May 14, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 217
  • Committers: 6
  • Issues: 38
  • Pull Requests: 72
  • Owner: ks905383
  • Stars: 100
  • Forks: 15
  • Packages: 3
  • Downloads: 1,060
https://github.com/gadomski/antimeridian

antimeridian: A Python package for correcting geometries that cross the 180th meridian - Published in JOSS (2025)
antimeridian geojson geospatial python
Added: 8 months ago - Last Synced: 8 months ago - Created: April 11, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 245
  • Committers: 3
  • Issues: 39
  • Pull Requests: 179
  • Owner: gadomski
  • Stars: 89
  • Forks: 7
  • Packages: 2
  • Downloads: 40,464
https://github.com/yuefan98/nleis.py

nleis.py: A Nonlinear Electrochemical Impedance Analysis Toolbox - Published in JOSS (2025)
2nd-nleis battery eis electrochemistry fuel-cell impedance-py lithium-ion-batteries
Added: 8 months ago - Last Synced: 8 months ago - Created: February 13, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 78
  • Committers: 4
  • Issues: 0
  • Pull Requests: 31
  • Owner: yuefan98
  • Stars: 11
  • Forks: 3
  • Packages: 1
  • Downloads: 29
https://github.com/opm/pyopmspe11

pyopmspe11: A Python framework using OPM Flow for the SPE11 benchmark project - Published in JOSS (2025)
co2 csp11 flow opm spe11
Added: 8 months ago - Last Synced: 8 months ago - Created: October 20, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 118
  • Committers: 8
  • Issues: 18
  • Pull Requests: 190
  • Owner: OPM
  • Stars: 15
  • Forks: 13
  • Packages: 0
https://github.com/ebi-jdispatcher/taxonomy-resolver

Taxonomy Resolver: A Python package for building and filtering taxonomy trees - Published in JOSS (2025)
bioinformatics bioinformatics-tool taxonomy
Added: 8 months ago - Last Synced: 8 months ago - Created: June 10, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 238
  • Committers: 4
  • Issues: 10
  • Pull Requests: 20
https://github.com/rwth-ebc/aixweather

AixWeather: A Weather Data Generation Tool for Building Energy System Simulations. Pull, Transform, Export. - Published in JOSS (2025)
converter dwd epw tmy3 try weather weatherdata weatherdatacollection
Added: 8 months ago - Last Synced: 8 months ago - Created: May 09, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 119
  • Committers: 8
  • Issues: 34
  • Pull Requests: 46
  • Owner: RWTH-EBC
  • Stars: 18
  • Forks: 0
  • Packages: 1
  • Downloads: 163
https://github.com/tqsd/photon_weave

PhotonWeave - Published in JOSS (2025)
jax optics quantum quantum-computing quantum-optics quantum-optics-simulation quantum-physics quantum-simulator
Added: 8 months ago - Last Synced: 8 months ago - Created: April 02, 2024

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 149
  • Committers: 3
  • Issues: 1
  • Pull Requests: 21
  • Owner: tqsd
  • Stars: 4
  • Forks: 4
  • Packages: 1
  • Downloads: 498
https://github.com/alan-turing-institute/autoemulate

AutoEmulate: A Python package for semi-automated emulation - Published in JOSS (2025)
active-learning calibration emulation ensemble gaussian-processes history-matching hut23 hut23-1468 mcmc neural-networks pytorch sensitivity-analysis uncertainty-quantification
Added: 8 months ago - Last Synced: 8 months ago - Created: August 01, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 3127
  • Committers: 18
  • Issues: 434
  • Pull Requests: 554
https://github.com/henrikmelin/h3ppy

h3ppy: An open-source Python package for modelling and fitting H$_3^+$ spectra - Published in JOSS (2025)
astronomy data-analysis planetary-science python3 spectroscopy
Added: 8 months ago - Last Synced: 8 months ago - Created: May 23, 2020

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 109
  • Committers: 2
  • Issues: 7
  • Pull Requests: 4
  • Owner: henrikmelin
  • Stars: 6
  • Forks: 1
  • Packages: 1
  • Downloads: 597
https://github.com/projectmesa/mesa

Mesa 3: Agent-based modeling with Python in 2025 - Published in JOSS (2025)
agent-based-modeling agent-based-simulation complex-systems complexity-analysis gis mesa modeling-agents simulation simulation-environment simulation-framework spatial-models
Added: 8 months ago - Last Synced: 8 months ago - Created: September 19, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2336
  • Committers: 169
  • Issues: 343
  • Pull Requests: 1309
  • Owner: projectmesa
  • Stars: 3188
  • Forks: 1044
  • Packages: 4
  • Downloads: 82,414
https://github.com/pyiron/executorlib

Executorlib – Up-scaling Python workflows for hierarchical heterogenous high-performance computing - Published in JOSS (2025)
flux hpc mpi mpi4py multiprocessing pyiron slurm
Added: 8 months ago - Last Synced: 8 months ago - Created: July 20, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1396
  • Committers: 7
  • Issues: 77
  • Pull Requests: 517
  • Owner: pyiron
  • Stars: 53
  • Forks: 3
  • Packages: 2
  • Downloads: 31,166
https://github.com/idaholab/montepy

MontePy: a Python library for reading, editing, and writing MCNP input files. - Published in JOSS (2025)
api hacktoberfest mcnp mcnp6 monte-carlo neutronics radiation-transport
Added: 8 months ago - Last Synced: 8 months ago - Created: January 09, 2024

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 4178
  • Committers: 9
  • Issues: 369
  • Pull Requests: 395
  • Owner: idaholab
  • Stars: 48
  • Forks: 18
  • Packages: 1
  • Downloads: 283
https://github.com/bodetobias/autopdex

AutoPDEx: An Automized Partial Differential Equation solver based on JAX - Published in JOSS (2025)
differential-algebraic-equations finite-element-method jax ordinary-differential-equations partial-differential-equations sensitivity-analysis
Added: 8 months ago - Last Synced: 8 months ago - Created: September 13, 2024

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 64
  • Committers: 3
  • Issues: 1
  • Pull Requests: 9
https://github.com/milanofthe/pathsim

PathSim - A System Simulation Framework - Published in JOSS (2025)
automatic-differentiation blockdiagram control-systems differentiable-simulations framework hierarchical-modeling nonlinear-dynamics python simulation simulation-framework system-simulation transient-analysis
Added: 8 months ago - Last Synced: 8 months ago - Created: July 12, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 778
  • Committers: 9
  • Issues: 23
  • Pull Requests: 51
  • Owner: milanofthe
  • Stars: 179
  • Forks: 14
  • Packages: 1
  • Downloads: 1,308
https://github.com/alexdaniel654/qlayers

3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI - Published in JOSS (2025)
image-analysis kidney-disease medical-imaging mri
Added: 8 months ago - Last Synced: 8 months ago - Created: November 22, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 78
  • Committers: 2
  • Issues: 7
  • Pull Requests: 2
  • Owner: alexdaniel654
  • Stars: 1
  • Forks: 2
  • Packages: 1
  • Downloads: 32
https://github.com/hyriver/hysetter

HySetter: A Python Package for Reproducible Hydroclimate Data Subsetting over CONUS - Published in JOSS (2025)
climate-data daymet gridmet hydrology nldas nwis
Added: 8 months ago - Last Synced: 8 months ago - Created: April 18, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 216
  • Committers: 4
  • Issues: 3
  • Pull Requests: 2
  • Owner: hyriver
  • Stars: 4
  • Forks: 2
  • Packages: 1
  • Downloads: 45
https://github.com/mne-tools/mne-lsl

MNE-LSL: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices. - Published in JOSS (2025)
brain brain-computer-interfaces labstreaminglayer lsl network neuroimaging neuroscience real-time visualisation
Added: 8 months ago - Last Synced: 8 months ago - Created: June 17, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1615
  • Committers: 18
  • Issues: 64
  • Pull Requests: 477
  • Owner: mne-tools
  • Stars: 80
  • Forks: 34
  • Packages: 1
  • Downloads: 8,709
https://github.com/hzacode/cheminformant

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access - Published in JOSS (2025)
api-client batch-processing caching cas cheminformatics chemistry cli compound-search data-validation dataframe drug-discovery iupac molecular-descriptors molecular-weight pandas pubchem python rest-api smiles sql
Added: 8 months ago - Last Synced: 8 months ago - Created: January 21, 2024

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 375
  • Committers: 3
  • Issues: 13
  • Pull Requests: 45
  • Owner: HzaCode
  • Stars: 4
  • Forks: 1
  • Packages: 1
  • Downloads: 446
https://github.com/emsl-computing/pore2chip

Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design - Published in JOSS (2025)
data-analysis data-visualization experimental-design flow lab lab-on-chip machine-learning microfluidics-chip-enrichment model-data-fusion neural-networks openpnm pore-network porous-materials porous-media python reactive-transport scientific-visualization soil terraforms xct
Added: 8 months ago - Last Synced: 8 months ago - Created: July 03, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 115
  • Committers: 5
  • Issues: 8
  • Pull Requests: 12
https://github.com/otvam/pypeec

PyPEEC: A 3D Quasi-Magnetostatic Solver using an FFT-Accelerated PEEC Method with Voxelization - Published in JOSS (2025)
3d conductor electric fft field-simulation frequency-domain magnetic maxwell-equations open-source-software peec power-electronics pypeec python voxel
Added: 8 months ago - Last Synced: 8 months ago - Created: December 29, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1784
  • Committers: 1
  • Issues: 12
  • Pull Requests: 0
  • Owner: otvam
  • Stars: 38
  • Forks: 4
  • Packages: 1
  • Downloads: 413
https://github.com/simonehagey/orbdot

OrbDot: A Python package for studying the secular evolution of exoplanet orbits - Published in JOSS (2025)
exoplanet-radial-velocities exoplanet-transits exoplanets model-fitting nested-sampling orbital-evolution
Added: 8 months ago - Last Synced: 8 months ago - Created: May 18, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 238
  • Committers: 8
  • Issues: 3
  • Pull Requests: 10
  • Owner: simonehagey
  • Stars: 1
  • Forks: 2
  • Packages: 1
  • Downloads: 31
https://github.com/bluespacepotato/hsi-wizard

hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications - Published in JOSS (2025)
hsi hyperspectral hyperspectral-imaging python python3
Added: 8 months ago - Last Synced: 8 months ago - Created: July 14, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 195
  • Committers: 2
  • Issues: 20
  • Pull Requests: 31
https://github.com/dpp4researchgroup/substrateminer

substrateminer: A Python package to investigate protein substrate repertoires - Published in JOSS (2025)
bioinformatics proteomics substrate
Added: 8 months ago - Last Synced: 8 months ago - Created: August 17, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 83
  • Committers: 4
  • Issues: 0
  • Pull Requests: 4
https://github.com/alb3rtjarvis/numbacs

NumbaCS: A fast Python package for coherent structure analysis - Published in JOSS (2025)
applied-mathematics coherent-structures dynamical-systems fluid-dynamics ftle geophysical-fluid-dynamics lagrangian-coherent-structures lcs numba
Added: 8 months ago - Last Synced: 8 months ago - Created: April 18, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 227
  • Committers: 2
  • Issues: 9
  • Pull Requests: 3
  • Owner: alb3rtjarvis
  • Stars: 27
  • Forks: 8
  • Packages: 1
  • Downloads: 45
https://github.com/geoarkadeep/stresslog

Stresslog: A Python package for modeling wellbore stability in inclined stress states - Published in JOSS (2025)
cross-platform dlis geomechanics las-files pore-pressure-prediction well-logs
Added: 8 months ago - Last Synced: 8 months ago - Created: February 16, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 497
  • Committers: 3
  • Issues: 9
  • Pull Requests: 3
  • Owner: GeoArkadeep
  • Stars: 12
  • Forks: 2
  • Packages: 2
  • Downloads: 1,252
https://github.com/cjtu/craterpy

Craterpy: Impact crater data science in Python - Published in JOSS (2025)
data-science open-science planetary python
Added: 8 months ago - Last Synced: 8 months ago - Created: April 17, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 350
  • Committers: 8
  • Issues: 35
  • Pull Requests: 90
  • Owner: cjtu
  • Stars: 20
  • Forks: 9
  • Packages: 1
  • Downloads: 433
https://github.com/parcels-code/parcels

Can be used to track passive and active particulates such as water, plankton, plastic and fish.
lagrangian-ocean-modelling ocean-circulation-models particles
Added: 8 months ago - Last Synced: 6 days ago - Created: September 29, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 6596
  • Committers: 77
  • Issues: 50
  • Pull Requests: 137
https://github.com/open-energy-transition/Awesome-Electrical-Grid-Mapping

A curated list of resources in the field of electric grid mapping to improve global open data coverage, harmonization and quality for a sustainable energy transition.
awesome electrical-grid gridmap openstreetmap powergrid renewable-energy
Added: over 1 year ago - Last Synced: 4 days ago - Created: January 02, 2025

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 473
  • Committers: 11
  • Issues: 4
  • Pull Requests: 7
https://github.com/doi-bor/pyforecast

A statistical modeling tool used by Reclamation water managers and reservoir operators to train and build predictive models for seasonal inflows and streamflows.
forecasting hydrology machine-learning python statistical-models
Added: almost 2 years ago - Last Synced: 5 days ago - Created: January 24, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 380
  • Committers: 6
  • Issues: 0
  • Pull Requests: 2
  • Owner: DOI-BOR
  • Stars: 31
  • Forks: 12
  • Packages: 0
https://github.com/pyTMD/pyTMD

Python-based tidal prediction software for estimating ocean, load, solid Earth and pole tides.
geodesy geophysics oceanography tides
Added: over 2 years ago - Last Synced: 6 days ago - Created: October 23, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 552
  • Committers: 8
  • Issues: 36
  • Pull Requests: 246
  • Owner: pyTMD
  • Stars: 203
  • Forks: 64
  • Packages: 2
  • Downloads: 70,317
https://github.com/earthaccess-dev/earthaccess

Search, download or stream NASA Earth science data with just a few lines of code.
access climate-data cloud-computing cmr data gis nasa nasa-api nasa-data open-science openscience pangeo remote-sensing
Added: over 2 years ago - Last Synced: 4 days ago - Created: August 25, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1339
  • Committers: 59
  • Issues: 33
  • Pull Requests: 56
  • Owner: earthaccess-dev
  • Stars: 610
  • Forks: 146
  • Packages: 1
  • Downloads: 224,748
https://github.com/primap-community/primap2

The next generation climate policy analysis suite.
climate-change climate-data climate-policy
Added: almost 3 years ago - Last Synced: 5 days ago - Created: January 04, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1126
  • Committers: 5
  • Issues: 40
  • Pull Requests: 191
https://github.com/primap-community/climate_categories

Commonly used codes, categories, terminologies, and nomenclatures used in climate policy analysis in a nice Python package.
climate-change climate-data
Added: almost 3 years ago - Last Synced: 4 days ago - Created: January 19, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 793
  • Committers: 6
  • Issues: 2
  • Pull Requests: 119
https://github.com/meteostat/meteostat

Access and analyze historical weather and climate data with Python.
climate climate-change climate-data data-science meteostat open-data statistics weather weather-data weather-station
Added: almost 3 years ago - Last Synced: 5 days ago - Created: August 05, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 325
  • Committers: 4
  • Issues: 9
  • Pull Requests: 2
  • Owner: meteostat
  • Stars: 650
  • Forks: 80
  • Packages: 1
  • Downloads: 696,799