https://github.com/WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
https://github.com/WrightonLabCSU/DRAM
Keywords
annotation bioinformatics genomics metagenome-assembled-genomes metagenomics microbiome viral-genomics viral-metagenomics
Keywords from Contributors
conda package-management
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
- Host: GitHub
- URL: https://github.com/WrightonLabCSU/DRAM
- Owner: WrightonLabCSU
- License: gpl-3.0
- Created: 2019-02-11T22:48:25.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2024-01-18T00:45:50.000Z (over 1 year ago)
- Last Synced: 2024-06-05T09:44:26.647Z (11 months ago)
- Topics: annotation, bioinformatics, genomics, metagenome-assembled-genomes, metagenomics, microbiome, viral-genomics, viral-metagenomics
- Language: Python
- Homepage:
- Size: 4.81 MB
- Stars: 238
- Watchers: 6
- Forks: 49
- Open Issues: 76
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: WrightonLabCSU
- Login: WrightonLabCSU
- Email:
- Kind: organization
- Description:
- Website:
- Location:
- Twitter: thewrightonlab
- Company:
- Icon url: https://avatars.githubusercontent.com/u/97117577?v=4
- Repositories: 6
- Last ynced at: 2023-03-04T19:28:51.986Z
- Profile URL: https://github.com/WrightonLabCSU
GitHub Events
Total
- Create event: 34
- Issues event: 315
- Release event: 9
- Watch event: 145
- Delete event: 5
- Member event: 1
- Issue comment event: 621
- Push event: 162
- Pull request review event: 1
- Gollum event: 12
- Pull request event: 51
- Fork event: 34
Last Year
- Create event: 7
- Delete event: 3
- Fork event: 11
- Issue comment event: 122
- Issues event: 79
- Pull request event: 6
- Pull request review event: 1
- Push event: 10
- Release event: 3
- Watch event: 61
Committers metadata
Last synced: 12 months ago
Total Commits: 765
Total Committers: 18
Avg Commits per committer: 42.5
Development Distribution Score (DDS): 0.271
Commits in past year: 9
Committers in past year: 3
Avg Commits per committer in past year: 3.0
Development Distribution Score (DDS) in past year: 0.556
| Name | Commits | |
|---|---|---|
| shafferm | m****r@u****u | 558 |
| Rory M Flynn | r****n@c****m | 116 |
| Rory M Flynn | r****o@g****m | 59 |
| IkaiaLeleiwi | i****i@g****m | 5 |
| JosuĂ© RodrĂguez-Ramos | j****s@g****m | 4 |
| Remi Denise | r****e@g****m | 4 |
| WrightonLabAdmin | 9****n | 3 |
| shaffer.635 | s****5@u****u | 3 |
| sixvable | 9****0@q****m | 2 |
| Michael Shaffer | m****r@c****u | 2 |
| Reed Woyda | 4****W | 2 |
| Mathias Schmitt | m****t@g****m | 1 |
| Mike Robbert | m****t@m****u | 1 |
| Nicholas Danes | n****s@m****u | 1 |
| dmitrisvetlov | 1****v | 1 |
| Peter Crowther | 1****t | 1 |
| Matthew DeMaere | c****s | 1 |
| greg | g****2@p****u | 1 |
Committer domains:
- mines.edu: 2
- psu.edu: 1
- colostate.edu: 1
- qq.com: 1
- unity-1.asc.ohio-state.edu: 1
- colostate.com: 1
- ucdenver.edu: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 165
Total pull requests: 12
Average time to close issues: 5 months
Average time to close pull requests: 13 days
Total issue authors: 128
Total pull request authors: 5
Average comments per issue: 3.35
Average comments per pull request: 0.25
Merged pull request: 11
Bot issues: 0
Bot pull requests: 0
Past year issues: 65
Past year pull requests: 3
Past year average time to close issues: 23 days
Past year average time to close pull requests: 11 days
Past year issue authors: 55
Past year pull request authors: 2
Past year average comments per issue: 1.51
Past year average comments per pull request: 0.0
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- SilasK (5)
- saras224 (4)
- jianshu93 (4)
- cmkobel (4)
- carleton-envbiotech (3)
- chenyj8 (3)
- microbial-cookie (3)
- sahilrishav2 (3)
- dgittins (2)
- dnolin13 (2)
- cjburgess (2)
- ghost (2)
- smdabdoub (2)
- Somebodyatthdoor (2)
- pabloati (2)
Top Pull Request Authors
- rmFlynn (7)
- BioRRW (2)
- wwood (1)
- mrobbert (1)
- jrr-microbio (1)
Top Issue Labels
- enhancement (9)
- bug (4)
- question (4)
- good first issue (3)
- help wanted (2)
Top Pull Request Labels
Dependencies
- Dev-CasperTheGhost/create-linear-issue 1.3.1 composite
- altair >=4
- barrnap
- dram
- hmmer !=3.3.1
- mmseqs2 13.45111
- networkx
- openpyxl
- pandas
- parallel
- prodigal
- pytest
- python >=3.7
- ruby
- scikit-bio
- scipy <=1.8.1
- sqlalchemy
- trnascan-se >=2
- altair *
- networkx *
- numpy *
- openpyxl *
- pandas *
- scikit-bio *
- sqlalchemy *
Score: 8.639764743804417