https://github.com/torognes/swarm
A robust and fast clustering method for amplicon-based studies
https://github.com/torognes/swarm
Keywords
bioinformatics clustering fasta metabarcoding microbiome sequence
Keywords from Contributors
amplicon fastq metagenomics chimera sequence-alignment
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A robust and fast clustering method for amplicon-based studies
- Host: GitHub
- URL: https://github.com/torognes/swarm
- Owner: torognes
- License: agpl-3.0
- Created: 2012-11-10T12:13:18.000Z (over 12 years ago)
- Default Branch: master
- Last Pushed: 2024-05-15T16:01:35.000Z (12 months ago)
- Last Synced: 2024-05-17T19:24:37.428Z (12 months ago)
- Topics: bioinformatics, clustering, fasta, metabarcoding, microbiome, sequence
- Language: C++
- Homepage:
- Size: 4.95 MB
- Stars: 119
- Watchers: 13
- Forks: 23
- Open Issues: 4
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata
- Name: Torbjørn Rognes
- Login: torognes
- Email:
- Kind: user
- Description:
- Website: https://www.mn.uio.no/ifi/english/people/aca/torognes/index.html
- Location: Oslo, Norway
- Twitter:
- Company: University of Oslo & Oslo University Hospital
- Icon url: https://avatars.githubusercontent.com/u/2765754?u=2e579ebaf992e740bb9cd5576b7968a275a6d1e5&v=4
- Repositories: 7
- Last ynced at: 2023-04-01T15:07:43.558Z
- Profile URL: https://github.com/torognes
Committers metadata
Last synced: 12 months ago
Total Commits: 2,873
Total Committers: 9
Avg Commits per committer: 319.222
Development Distribution Score (DDS): 0.236
Commits in past year: 1,806
Committers in past year: 3
Avg Commits per committer in past year: 602.0
Development Distribution Score (DDS) in past year: 0.006
| Name | Commits | |
|---|---|---|
| Frédéric Mahé | f****e@c****r | 2194 |
| Frédéric Mahé | m****e@r****e | 376 |
| Torbjørn Rognes | t****s@i****o | 291 |
| etienneplatini | e****i@s****m | 5 |
| Lucas Czech | l****h@g****m | 2 |
| Lucas Czech | l****c@s****h | 2 |
| Ryan Moore | m****r@u****u | 1 |
| Torbj|rn Rognes | t****s@c****l | 1 |
| Vladimir Mikryukov | v****k | 1 |
Committer domains:
- udel.edu: 1
- s-cze.ch: 1
- skycha.com: 1
- ifi.uio.no: 1
- rhrk.uni-kl.de: 1
- cirad.fr: 1
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 102
Total pull requests: 5
Average time to close issues: 7 months
Average time to close pull requests: about 13 hours
Total issue authors: 29
Total pull request authors: 4
Average comments per issue: 5.79
Average comments per pull request: 2.0
Merged pull request: 5
Bot issues: 0
Bot pull requests: 0
Past year issues: 6
Past year pull requests: 1
Past year average time to close issues: 7 days
Past year average time to close pull requests: 28 minutes
Past year issue authors: 4
Past year pull request authors: 1
Past year average comments per issue: 2.0
Past year average comments per pull request: 2.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- frederic-mahe (46)
- torognes (18)
- dcm9123 (4)
- Gian77 (3)
- a1an77 (3)
- davidvilanova (2)
- KabitaBaral1 (2)
- mariabernard (2)
- naurasd (2)
- trebor-m (1)
- tilaknayak (1)
- steph43 (1)
- yoann-dufresne (1)
- sfehrmann (1)
- sariya (1)
Top Pull Request Authors
- lczech (2)
- vmikk (1)
- mooreryan (1)
- frederic-mahe (1)
Top Issue Labels
- enhancement (58)
- question (25)
- bug (8)
Top Pull Request Labels
Package metadata
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
spack.io: swarm
A robust and fast clustering method for amplicon-based studies.
- Homepage: https://github.com/torognes/swarm
- Licenses: []
- Latest release: 3.0.0 (published about 3 years ago)
- Last Synced: 2024-05-16T05:07:24.060Z (12 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 0.0%
- Stargazers count: 17.368%
- Forks count: 19.939%
- Average: 23.645%
- Dependent packages count: 57.274%
Dependencies
- alpine latest build
Score: -Infinity