Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/koeng101/dnadesign

A Go package for designing DNA.
bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology
Added: over 1 year ago - Last Synced: 11 months ago - Created: December 07, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Go
  • Commits: 477
  • Committers: 37
  • Issues: 41
  • Pull Requests: 32
  • Owner: Koeng101
  • Stars: 19
  • Forks: 0
  • Packages: 3
https://github.com/evolbioinfo/goalign

Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
alignment fasta nexus phylip phylip-alignment phylogeny
Added: over 1 year ago - Last Synced: 11 months ago - Created: August 24, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Go
  • Commits: 619
  • Committers: 2
  • Issues: 12
  • Pull Requests: 2
https://github.com/torognes/swarm

A robust and fast clustering method for amplicon-based studies
bioinformatics clustering fasta metabarcoding microbiome sequence
Added: over 1 year ago - Last Synced: 11 months ago - Created: November 10, 2012

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 2873
  • Committers: 9
  • Issues: 102
  • Pull Requests: 5
  • Owner: torognes
  • Stars: 119
  • Forks: 23
  • Packages: 1
https://github.com/Gabaldonlab/redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
assembled-contigs assembly bioinformatics closing contigs docker-image fasta gap genome-assembly genomics heterozygous mate-pairs paired-end pipeline polymorphic python scaffolding
Added: over 1 year ago - Last Synced: 11 months ago - Created: April 07, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 560
  • Committers: 12
  • Issues: 102
  • Pull Requests: 6
https://github.com/bebop/poly

A Go package for engineering organisms.
alignment bioengineering bioinformatics codon-optimizer computational-biology dna dna-barcode dna-barcoding fasta genbank genetic-engineering go golden-gate mash molecular-biology plasmids primer-design sequence-hashing synbio synthetic-biology
Added: over 1 year ago - Last Synced: over 1 year ago - Created: May 29, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Go
  • Commits: 472
  • Committers: 38
  • Issues: 53
  • Pull Requests: 55
  • Owner: bebop
  • Stars: 655
  • Forks: 68
  • Packages: 1
https://github.com/chrovis/cljam

A DNA Sequence Alignment/Map (SAM) library for Clojure
2bit bam bcf bed bigwig bioinformatics clojure fasta fastq genomics gff sam vcf wig
Added: over 1 year ago - Last Synced: 11 months ago - Created: January 08, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Clojure
  • Commits: 1270
  • Committers: 17
  • Issues: 17
  • Pull Requests: 125
  • Owner: chrovis
  • Stars: 88
  • Forks: 12
  • Packages: 1
  • Downloads: 17,635