https://github.com/biocore/redbiom
Sample search by metadata and features
https://github.com/biocore/redbiom
Keywords
bioinformatics biom microbiome qiime
Keywords from Contributors
phylogenetics conda package-management
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Sample search by metadata and features
- Host: GitHub
- URL: https://github.com/biocore/redbiom
- Owner: biocore
- License: other
- Created: 2017-01-13T00:07:28.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2023-08-31T23:21:29.000Z (over 1 year ago)
- Last Synced: 2024-05-28T07:34:45.342Z (12 months ago)
- Topics: bioinformatics, biom, microbiome, qiime
- Language: Python
- Homepage:
- Size: 2.3 MB
- Stars: 43
- Watchers: 8
- Forks: 20
- Open Issues: 24
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: COPYING.txt
Owner metadata
- Name: biocore
- Login: biocore
- Email:
- Kind: organization
- Description: Collaboratively developed bioinformatics software.
- Website: http://biocore.github.io/
- Location: Cyberspace
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/6241857?v=4
- Repositories: 76
- Last ynced at: 2023-03-11T02:51:03.087Z
- Profile URL: https://github.com/biocore
GitHub Events
Total
- Fork event: 24
- Create event: 16
- Commit comment event: 1
- Release event: 17
- Issues event: 98
- Watch event: 45
- Delete event: 3
- Issue comment event: 130
- Member event: 5
- Push event: 66
- Pull request review event: 5
- Pull request review comment event: 33
- Pull request event: 85
Last Year
- Fork event: 2
- Issue comment event: 23
- Issues event: 4
- Member event: 1
- Pull request event: 4
- Pull request review event: 1
- Push event: 2
- Watch event: 3
Committers metadata
Last synced: 12 months ago
Total Commits: 204
Total Committers: 8
Avg Commits per committer: 25.5
Development Distribution Score (DDS): 0.475
Commits in past year: 3
Committers in past year: 2
Avg Commits per committer in past year: 1.5
Development Distribution Score (DDS) in past year: 0.333
| Name | Commits | |
|---|---|---|
| Daniel McDonald | m****t@c****u | 107 |
| Daniel McDonald | d****d@u****u | 74 |
| Antonio Gonzalez | a****a@g****m | 11 |
| Ben Kaehler | k****r@g****m | 5 |
| jwdebelius | j****s@g****m | 3 |
| ryanc16 | r****4@y****m | 2 |
| Charles Cowart | c****t@u****u | 1 |
| Jose Navas | j****a@g****m | 1 |
Committer domains:
- ucsd.edu: 2
- colorado.edu: 1
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 63
Total pull requests: 42
Average time to close issues: over 2 years
Average time to close pull requests: 24 days
Total issue authors: 19
Total pull request authors: 7
Average comments per issue: 1.48
Average comments per pull request: 0.83
Merged pull request: 38
Bot issues: 0
Bot pull requests: 0
Past year issues: 3
Past year pull requests: 2
Past year average time to close issues: about 1 hour
Past year average time to close pull requests: about 1 hour
Past year issue authors: 3
Past year pull request authors: 2
Past year average comments per issue: 6.67
Past year average comments per pull request: 0.5
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- wasade (31)
- antgonza (8)
- ElDeveloper (4)
- hotblast (3)
- BenKaehler (2)
- nvpatin (2)
- charles-cowart (1)
- cotillau (1)
- cuttlefishh (1)
- AlohaPropolis (1)
- adswafford (1)
- josenavas (1)
- jwdebelius (1)
- kattweigh2 (1)
- rahel31 (1)
Top Pull Request Authors
- wasade (32)
- antgonza (4)
- josenavas (2)
- BenKaehler (1)
- charles-cowart (1)
- ryanc16 (1)
- jwdebelius (1)
Top Issue Labels
- server-side-support (9)
- enhancement (1)
- question (1)
Top Pull Request Labels
Package metadata
- Total packages: 2
-
Total downloads:
- pypi: 282 last-month
- Total dependent packages: 1 (may contain duplicates)
- Total dependent repositories: 4 (may contain duplicates)
- Total versions: 12
- Total maintainers: 1
pypi.org: redbiom
- Homepage: https://github.com/biocore/redbiom
- Documentation: https://redbiom.readthedocs.io/
- Licenses: BSD-3-Clause
- Latest release: 0.3.9 (published over 2 years ago)
- Last Synced: 2024-05-28T01:03:28.123Z (12 months ago)
- Versions: 10
- Dependent Packages: 1
- Dependent Repositories: 4
- Downloads: 282 Last month
-
Rankings:
- Dependent packages count: 4.787%
- Dependent repos count: 7.484%
- Forks count: 8.381%
- Average: 8.547%
- Stargazers count: 10.066%
- Downloads: 12.016%
- Maintainers (1)
conda-forge.org: redbiom
redbiom is a cache service for sample metadata and sample data. If used, please cite "redbiom: a Rapid Sample Discovery and Feature Characterization System. Daniel McDonald, Benjamin Kaehler, Antonio Gonzalez, Jeff DeReus, Gail Ackermann, Clarisse Marotz, Gavin Huttley, Rob Knight mSystems 2019, 4:4."
- Homepage: https://github.com/biocore/redbiom
- Licenses: BSD-3-Clause
- Latest release: 0.3.5 (published over 5 years ago)
- Last Synced: 2024-05-27T06:03:57.473Z (12 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 34.025%
- Forks count: 34.734%
- Stargazers count: 38.832%
- Average: 39.692%
- Dependent packages count: 51.175%
Dependencies
- biom-format *
- click *
- h5py *
- joblib *
- msgpack *
- nltk *
- pandas *
- requests *
- scikit-bio *
- actions/checkout v2 composite
- actions/setup-python v2 composite
- conda-incubator/setup-miniconda v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- pypa/gh-action-pypi-publish release/v1 composite
Score: 11.947094641206748