https://github.com/koeng101/dnadesign
A Go package for designing DNA.
https://github.com/koeng101/dnadesign
Keywords
bioinformatics codon-optimization codon-usage computational-biology dna-barcode dna-folding fasta fastq genbank genetic-engineering go goldengate molecular-biology pileup plasmids rna-folding sam synbio synthetic-biology
Keywords from Contributors
alignment bioengineering codon-optimizer dna dna-barcoding golden-gate mash primer-design sequence-hashing
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A Go package for designing DNA.
- Host: GitHub
- URL: https://github.com/koeng101/dnadesign
- Owner: Koeng101
- License: other
- Created: 2023-12-07T16:32:40.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-05-31T16:24:27.000Z (11 months ago)
- Last Synced: 2024-05-31T18:01:44.370Z (11 months ago)
- Topics: bioinformatics, codon-optimization, codon-usage, computational-biology, dna-barcode, dna-folding, fasta, fastq, genbank, genetic-engineering, go, goldengate, molecular-biology, pileup, plasmids, rna-folding, sam, synbio, synthetic-biology
- Language: Go
- Homepage:
- Size: 10.3 MB
- Stars: 19
- Watchers: 3
- Forks: 0
- Open Issues: 15
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Funding: .github/FUNDING.yml
- License: LICENSE
Owner metadata
- Name:
- Login: Koeng101
- Email:
- Kind: user
- Description:
- Website: blog.libredna.org
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/2896607?u=2600485bd62f429d274b09236154dd6bf45b8a35&v=4
- Repositories: 15
- Last ynced at: 2023-03-05T10:04:11.328Z
- Profile URL: https://github.com/Koeng101
GitHub Events
Total
- Issues event: 60
- Watch event: 17
- Delete event: 26
- Issue comment event: 98
- Push event: 168
- Pull request event: 62
- Create event: 33
Last Year
- Create event: 33
- Delete event: 26
- Issue comment event: 98
- Issues event: 60
- Pull request event: 62
- Push event: 168
- Watch event: 17
Committers metadata
Last synced: over 1 year ago
Total Commits: 477
Total Committers: 37
Avg Commits per committer: 12.892
Development Distribution Score (DDS): 0.572
Commits in past year: 88
Committers in past year: 15
Avg Commits per committer in past year: 5.867
Development Distribution Score (DDS) in past year: 0.636
| Name | Commits | |
|---|---|---|
| Tim | T****s | 204 |
| Timothy Stiles | t****m@s****o | 130 |
| Koeng101 | K****1@g****m | 64 |
| Keoni Gandall | k****1@g****m | 18 |
| Willow Carretero Chavez | s****s@g****m | 13 |
| jkh | j****n@e****o | 4 |
| Tim | T****s@g****m | 3 |
| Praveen Ramalingam | r****n@g****m | 3 |
| Patricio Whittingslow | g****p@g****m | 3 |
| Matias Insaurralde | m****s@i****e | 3 |
| fergloragain | 9****n | 2 |
| Isaac Guerreiro | i****4@s****r | 2 |
| Paul | p****e@g****m | 2 |
| Leonhard Gruenschloss | l****d@g****g | 2 |
| Radhakrishna Sanka | r****a@g****m | 2 |
| Jeff Cole | c****6@s****u | 1 |
| Jorropo | j****m@g****m | 1 |
| palmerito0 | p****0 | 1 |
| mithrandir2k8 | 8****8 | 1 |
| jxilt | 8****t | 1 |
| Thomas Vetterli | T****t | 1 |
| Jordan Campbell | 1****6 | 1 |
| Leonhard Gruenschloss | l****s@p****u | 1 |
| Matias Insaurralde | m****e@g****m | 1 |
| Maximilien Rothier Bautzer | m****r@g****m | 1 |
| Mehul Kar | m****r@v****m | 1 |
| Pedro Fialho | f****m@g****m | 1 |
| Ragnor Comerford | h****o@r****o | 1 |
| Ragnor Comerford | r****d@g****m | 1 |
| Toothsy | c****a@g****m | 1 |
| and 7 more... | ||
Committer domains:
- github.com: 1
- bepro11.com: 1
- proton.me: 1
- ragnor.co: 1
- vercel.com: 1
- populationgenomics.org.au: 1
- students.ecu.edu: 1
- gruenschloss.org: 1
- saqueepague.com.br: 1
- insaurral.de: 1
- expo.io: 1
- stiles.io: 1
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 41
Total pull requests: 32
Average time to close issues: 6 days
Average time to close pull requests: 3 days
Total issue authors: 2
Total pull request authors: 1
Average comments per issue: 0.68
Average comments per pull request: 1.25
Merged pull request: 26
Bot issues: 0
Bot pull requests: 0
Past year issues: 41
Past year pull requests: 32
Past year average time to close issues: 6 days
Past year average time to close pull requests: 3 days
Past year issue authors: 2
Past year pull request authors: 1
Past year average comments per issue: 0.68
Past year average comments per pull request: 1.25
Past year merged pull request: 26
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- Koeng101 (40)
- CamelCaseCam (1)
Top Pull Request Authors
- Koeng101 (32)
Top Issue Labels
- enhancement (38)
- help wanted (2)
- documentation (2)
- good first issue (1)
- blocked (1)
Top Pull Request Labels
Package metadata
- Total packages: 3
- Total downloads: unknown
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 0 (may contain duplicates)
- Total versions: 16
proxy.golang.org: github.com/koeng101/dnadesign/external
Package external contains functions that interact with outside programs. The primary way that external interacts with common bioinformatics tools is through the command line, so the bioinformatics programs must be installed on your local computer. We would like to port these programs to be in `lib`, using WASM for reliable builds, but until then, they live here.
- Homepage: https://github.com/koeng101/dnadesign
- Documentation: https://pkg.go.dev/github.com/koeng101/dnadesign/external#section-documentation
- Licenses: MIT
- Latest release: v0.0.0-20240119234551-3aab61ca0722 (published over 1 year ago)
- Last Synced: 2024-05-31T18:17:11.982Z (11 months ago)
- Versions: 2
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 8.973%
- Average: 9.546%
- Dependent repos count: 10.118%
proxy.golang.org: github.com/koeng101/dnadesign/lib
Package DnaDesign is a Go package for engineering organisms. Browse our subpackages to find the functionality and documentation you need: https://pkg.go.dev/github.com/koeng101/dnadesign/lib#section-directories
- Homepage: https://github.com/koeng101/dnadesign
- Documentation: https://pkg.go.dev/github.com/koeng101/dnadesign/lib#section-documentation
- Licenses: MIT
- Latest release: v0.0.0-20240102035615-919d6857f9e7 (published over 1 year ago)
- Last Synced: 2024-05-31T18:17:12.214Z (11 months ago)
- Versions: 10
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 9.553%
- Average: 10.163%
- Dependent repos count: 10.772%
proxy.golang.org: github.com/koeng101/dnadesign
- Homepage: https://github.com/koeng101/dnadesign
- Documentation: https://pkg.go.dev/github.com/koeng101/dnadesign#section-documentation
- Licenses: MIT
- Latest release: v0.0.0-20231216035044-6adf9db2add7 (published over 1 year ago)
- Last Synced: 2024-05-31T18:17:12.066Z (11 months ago)
- Versions: 4
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 9.564%
- Average: 10.175%
- Dependent repos count: 10.785%
Dependencies
- actions/checkout v2 composite
- golangci/golangci-lint-action v2.5.2 composite
- actions/checkout v2 composite
- actions/setup-go v2 composite
- schneegans/dynamic-badges-action master composite
- actions/checkout v2 composite
- actions/setup-go v2 composite
- goreleaser/goreleaser-action v2 composite
- bdougie/take-action main composite
- actions/checkout v2 composite
- actions/setup-go v2 composite
- github.com/google/go-cmp v0.6.0
- golang.org/x/sync v0.5.0
- github.com/google/go-cmp v0.6.0
- golang.org/x/sync v0.5.0
- golang.org/x/sync v0.5.0
- golang.org/x/sync v0.5.0
Score: -Infinity