https://github.com/dwhswenson/contact_map
Contact map analysis for biomolecules; based on MDTraj
https://github.com/dwhswenson/contact_map
Keywords
biochemistry bioinformatics computational-biology molecular-dynamics protein-ligand-interactions protein-protein-interaction
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Contact map analysis for biomolecules; based on MDTraj
- Host: GitHub
- URL: https://github.com/dwhswenson/contact_map
- Owner: dwhswenson
- License: lgpl-2.1
- Created: 2017-02-08T15:44:52.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2024-01-29T16:05:07.000Z (over 1 year ago)
- Last Synced: 2024-06-03T22:12:34.420Z (11 months ago)
- Topics: biochemistry, bioinformatics, computational-biology, molecular-dynamics, protein-ligand-interactions, protein-protein-interaction
- Language: Python
- Homepage:
- Size: 11 MB
- Stars: 38
- Watchers: 4
- Forks: 15
- Open Issues: 12
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: David W.H. Swenson
- Login: dwhswenson
- Email:
- Kind: user
- Description: Theoretical chemist. Lead developer of OpenPathSampling and Contact Map Explorer. Infrastructure Lead for Open Free Energy.
- Website: http://www.hyperblazer.net/
- Location: Chicago
- Twitter: davidswenson
- Company: Open Molecular Software Foundation
- Icon url: https://avatars.githubusercontent.com/u/8178546?u=66239b36d9f99ce98085b2f1f6ed1bc1fc4a7906&v=4
- Repositories: 78
- Last ynced at: 2023-12-14T08:00:36.528Z
- Profile URL: https://github.com/dwhswenson
GitHub Events
Total
- Create event: 92
- Release event: 16
- Issues event: 48
- Watch event: 35
- Delete event: 68
- Member event: 1
- Issue comment event: 344
- Push event: 402
- Pull request review event: 89
- Pull request review comment event: 88
- Pull request event: 205
- Fork event: 16
Last Year
- Create event: 2
- Delete event: 2
- Fork event: 3
- Issue comment event: 22
- Issues event: 7
- Pull request event: 4
- Pull request review comment event: 3
- Pull request review event: 7
- Push event: 7
- Watch event: 6
Committers metadata
Last synced: over 1 year ago
Total Commits: 483
Total Committers: 4
Avg Commits per committer: 120.75
Development Distribution Score (DDS): 0.242
Commits in past year: 7
Committers in past year: 1
Avg Commits per committer in past year: 7.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| David W.H. Swenson | d****s@h****t | 366 |
| sroet | s****t@h****m | 114 |
| Sander Roet | s****t@g****m | 2 |
| Nabil Faisal Faruk | n****k@u****u | 1 |
Committer domains:
- uchicago.edu: 1
- hyperblazer.net: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 28
Total pull requests: 80
Average time to close issues: 3 months
Average time to close pull requests: about 1 month
Total issue authors: 13
Total pull request authors: 3
Average comments per issue: 3.86
Average comments per pull request: 2.93
Merged pull request: 76
Bot issues: 0
Bot pull requests: 0
Past year issues: 6
Past year pull requests: 2
Past year average time to close issues: about 21 hours
Past year average time to close pull requests: about 22 hours
Past year issue authors: 5
Past year pull request authors: 1
Past year average comments per issue: 2.5
Past year average comments per pull request: 4.0
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- dwhswenson (8)
- sroet (7)
- PeptideSimulator01 (2)
- sam-mahdi (2)
- aparente-nurix (1)
- astomer2 (1)
- FYY99117 (1)
- Jiaxing2018 (1)
- nffaruk (1)
- retlaw-1 (1)
- varun-go (1)
- victorprincipe (1)
- wayuer19 (1)
Top Pull Request Authors
- dwhswenson (53)
- sroet (26)
- nffaruk (1)
Top Issue Labels
Top Pull Request Labels
- misc PR (42)
- enhancement (15)
- docs (8)
- upstream_changed (6)
- api break (5)
- ci (4)
- deprecation (2)
- bugfix (1)
- bug (1)
- performance (1)
Package metadata
- Total packages: 2
-
Total downloads:
- pypi: 98 last-month
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 1 (may contain duplicates)
- Total versions: 22
- Total maintainers: 2
pypi.org: contact-map
Contact maps based on MDTraj
- Homepage: https://github.com/dwhswenson/contact_map
- Documentation: https://contact-map.readthedocs.io/
- Licenses: LGPL 2.1+
- Latest release: 0.7.0 (published over 4 years ago)
- Last Synced: 2024-06-03T22:00:44.862Z (11 months ago)
- Versions: 12
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 98 Last month
-
Rankings:
- Forks count: 9.842%
- Dependent packages count: 10.126%
- Stargazers count: 10.83%
- Average: 14.574%
- Downloads: 20.538%
- Dependent repos count: 21.535%
- Maintainers (2)
conda-forge.org: contact_map
Contact maps based on MDTraj; useful for studying for intramolecular and intermolecular contacts from simulations of biomolecular systems. For a more detailed description, see package's documentation.
- Homepage: http://github.com/dwhswenson/contact_map
- Licenses: LGPL-2.1-or-later
- Latest release: 0.7.0 (published over 4 years ago)
- Last Synced: 2024-06-03T22:27:14.297Z (11 months ago)
- Versions: 10
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent repos count: 34.025%
- Forks count: 39.995%
- Average: 41.883%
- Stargazers count: 42.336%
- Dependent packages count: 51.175%
Dependencies
- jupyter
- mdtraj 1.9.2.*
- nbsphinx
- numpy 1.16.2.*
- packaging 19.0.*
- pandas 0.24.2.*
- pandoc
- python 3.7.*
- scipy 1.2.1.*
- jupyter *
- nbsphinx *
- packaging *
- pandoc *
- cython *
- numpy *
- tables *
Score: 9.913437883389296