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https://github.com/bebop/poly

A Go package for engineering organisms.
https://github.com/bebop/poly

Keywords

alignment bioengineering bioinformatics codon-optimizer computational-biology dna dna-barcode dna-barcoding fasta genbank genetic-engineering go golden-gate mash molecular-biology plasmids primer-design sequence-hashing synbio synthetic-biology

Last synced: over 1 year ago
JSON representation

Acceptance Criteria

Repository metadata

A Go package for engineering organisms.

Owner metadata

GitHub Events

Total
Last Year

Committers metadata

Last synced: 11 months ago

Total Commits: 472
Total Committers: 38
Avg Commits per committer: 12.421
Development Distribution Score (DDS): 0.536

Commits in past year: 72
Committers in past year: 11
Avg Commits per committer in past year: 6.545
Development Distribution Score (DDS) in past year: 0.625

Name Email Commits
Tim T****s 219
Timothy Stiles t****m@s****o 132
Koeng101 K****1@g****m 46
Willow Carretero Chavez s****s@g****m 20
Matias Insaurralde m****s@i****e 4
jkh j****n@e****o 4
Keoni Gandall k****1@g****m 3
Patricio Whittingslow g****p@g****m 3
Praveen Ramalingam r****n@g****m 3
Tim T****s@g****m 3
fergloragain 9****n 2
Isaac Guerreiro i****4@s****r 2
Paul p****e@g****m 2
Leonhard Gruenschloss l****d@g****g 2
Maximilien Rothier Bautzer m****r@g****m 2
Radhakrishna Sanka r****a@g****m 2
Trenton w Fleming t****m@g****m 2
Giacomo Tartari g****i@g****m 1
Isaac Guerreiro i****m@g****m 1
palmerito0 p****0 1
mithrandir2k8 8****8 1
jxilt 8****t 1
Thomas Vetterli T****t 1
Jordan Campbell 1****6 1
Jeff Cole c****6@s****u 1
Jorropo j****m@g****m 1
Leonhard Gruenschloss l****s@p****u 1
Matias Insaurralde m****e@g****m 1
Mehul Kar m****r@v****m 1
Pedro Fialho f****m@g****m 1
and 8 more...

Committer domains:

Issue and Pull Request metadata

Last synced: over 1 year ago

Total issues: 53
Total pull requests: 55
Average time to close issues: 4 months
Average time to close pull requests: 12 days
Total issue authors: 6
Total pull request authors: 8
Average comments per issue: 3.74
Average comments per pull request: 1.87
Merged pull request: 40
Bot issues: 0
Bot pull requests: 0

Past year issues: 46
Past year pull requests: 55
Past year average time to close issues: about 1 month
Past year average time to close pull requests: 12 days
Past year issue authors: 5
Past year pull request authors: 8
Past year average comments per issue: 3.37
Past year average comments per pull request: 1.87
Past year merged pull request: 40
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/bebop/poly

Top Issue Authors

  • carreter (19)
  • Koeng101 (18)
  • TimothyStiles (13)
  • cachemoi (1)
  • matiasinsaurralde (1)
  • toothsy (1)

Top Pull Request Authors

  • carreter (20)
  • TimothyStiles (16)
  • Koeng101 (7)
  • abondrn (3)
  • TwFlem (3)
  • matiasinsaurralde (3)
  • cachemoi (2)
  • folago (1)

Top Issue Labels

  • enhancement (22)
  • easy (15)
  • stale (14)
  • medium priority (14)
  • help wanted (13)
  • intermediate (12)
  • high priority (12)
  • bug (10)
  • low priority (10)
  • hard (10)
  • good first issue (8)
  • proposal (6)
  • documentation (5)
  • devops (5)
  • wontfix (4)
  • needs-triage (4)
  • ux (2)
  • windows (1)
  • question (1)

Top Pull Request Labels

  • blocked (2)
  • stale (2)
  • help wanted (1)
  • duplicate (1)

Package metadata

proxy.golang.org: github.com/bebop/poly

Package poly is a Go package for engineering organisms. Synthetic biology has a software problem. I.E almost all of our field's software is slow, hard to maintain, and even harder to deploy. Poly solves that problem by providing a highly tested suite of common functions for engineering organisms through a simple interface in Go. The reason why Go was chosen is that it's a highly popular language with a simple syntax and a large ecosystem of packages that makes it *extremely* easy to learn, use, and deploy. It's also on average 25X faster and more energy efficient that Python. Eventually we intend for poly to provide all the functionality needed such that users can use it to engineer proteins which they can then optimize and insert into their organisms of choice. We've made great progress and are always looking for more support! tl;dr Poly is awesome. Throw money at Tim's github sponsors page: https://github.com/sponsors/TimothyStiles Browse our subpackages to find the functionality and documentation you need: https://pkg.go.dev/github.com/bebop/poly#section-directories

  • Homepage: https://github.com/bebop/poly
  • Documentation: https://pkg.go.dev/github.com/bebop/poly#section-documentation
  • Licenses: MIT
  • Latest release: v0.31.1 (published over 1 year ago)
  • Last Synced: 2024-06-11T13:08:51.031Z (11 months ago)
  • Versions: 57
  • Dependent Packages: 1
  • Dependent Repositories: 0
  • Rankings:
    • Dependent packages count: 9.558%
    • Average: 10.17%
    • Dependent repos count: 10.783%

Dependencies

.github/workflows/coverage.yml actions
  • actions/checkout v2 composite
  • actions/setup-go v2 composite
  • schneegans/dynamic-badges-action master composite
.github/workflows/golangci-lint.yml actions
  • actions/checkout v2 composite
  • golangci/golangci-lint-action v2.5.2 composite
.github/workflows/notify.yml actions
  • Ilshidur/action-discord 0.3.2 composite
  • actions/checkout master composite
.github/workflows/release.yml actions
  • actions/checkout v2 composite
  • actions/setup-go v2 composite
  • goreleaser/goreleaser-action v2 composite
.github/workflows/test.yml actions
  • actions/checkout v2 composite
  • actions/setup-go v2 composite
go.mod go
  • github.com/davecgh/go-spew v1.1.1
  • github.com/google/go-cmp v0.5.6
  • github.com/klauspost/cpuid v1.3.1
  • github.com/lunny/log v0.0.0-20160921050905-7887c61bf0de
  • github.com/mattn/go-sqlite3 v1.14.13
  • github.com/mitchellh/go-wordwrap v1.0.1
  • github.com/mroth/weightedrand v0.4.1
  • github.com/pmezard/go-difflib v1.0.0
  • github.com/sergi/go-diff v1.2.0
  • github.com/stretchr/testify v1.4.0
  • golang.org/x/xerrors v0.0.0-20200804184101-5ec99f83aff1
  • gopkg.in/yaml.v2 v2.4.0
  • lukechampine.com/blake3 v1.1.5
go.sum go
  • github.com/davecgh/go-spew v1.1.0
  • github.com/davecgh/go-spew v1.1.1
  • github.com/google/go-cmp v0.5.6
  • github.com/klauspost/cpuid v1.3.1
  • github.com/kr/pretty v0.1.0
  • github.com/kr/pty v1.1.1
  • github.com/kr/text v0.1.0
  • github.com/lunny/log v0.0.0-20160921050905-7887c61bf0de
  • github.com/mattn/go-sqlite3 v1.14.13
  • github.com/mitchellh/go-wordwrap v1.0.1
  • github.com/mroth/weightedrand v0.4.1
  • github.com/pmezard/go-difflib v1.0.0
  • github.com/sergi/go-diff v1.2.0
  • github.com/stretchr/objx v0.1.0
  • github.com/stretchr/testify v1.4.0
  • golang.org/x/xerrors v0.0.0-20191204190536-9bdfabe68543
  • golang.org/x/xerrors v0.0.0-20200804184101-5ec99f83aff1
  • gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405
  • gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15
  • gopkg.in/yaml.v2 v2.2.2
  • gopkg.in/yaml.v2 v2.2.4
  • gopkg.in/yaml.v2 v2.4.0
  • lukechampine.com/blake3 v1.1.5
.github/workflows/blocking_issues.yml actions
  • Levi-Lesches/blocking-issues v2 composite
.github/workflows/stale.yml actions
  • actions/stale v5 composite

Score: -Infinity