https://github.com/klamt-lab/straindesign
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
https://github.com/klamt-lab/straindesign
Keywords
bioinformatics cobrapy computational-biology flux-space mcs milp optcouple optknock python robustknock strain-design strain-engineering systems-biology
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
- Host: GitHub
- URL: https://github.com/klamt-lab/straindesign
- Owner: klamt-lab
- License: apache-2.0
- Created: 2022-04-26T08:26:28.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-05-07T13:11:13.000Z (about 1 year ago)
- Last Synced: 2024-06-01T10:08:42.398Z (11 months ago)
- Topics: bioinformatics, cobrapy, computational-biology, flux-space, mcs, milp, optcouple, optknock, python, robustknock, strain-design, strain-engineering, systems-biology
- Language: Python
- Homepage:
- Size: 39.1 MB
- Stars: 33
- Watchers: 3
- Forks: 6
- Open Issues: 10
- Releases: 0
-
Metadata Files:
- Readme: README.rst
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
Owner metadata
- Name: Steffen Klamt's Lab at the Max Planck Institute Magdeburg
- Login: klamt-lab
- Email: [email protected]
- Kind: organization
- Description: Software developed by members of the ARB group of Steffen Klamt at the Max Planck Institute Magdeburg
- Website: https://www.mpi-magdeburg.mpg.de/14969/arb
- Location: Magdeburg
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/58264470?v=4
- Repositories: 5
- Last ynced at: 2023-03-05T16:58:00.807Z
- Profile URL: https://github.com/klamt-lab
GitHub Events
Total
- Create event: 24
- Issues event: 24
- Release event: 21
- Watch event: 35
- Delete event: 5
- Issue comment event: 40
- Member event: 3
- Public event: 1
- Push event: 474
- Pull request event: 9
- Fork event: 5
Last Year
- Create event: 2
- Delete event: 3
- Fork event: 3
- Issue comment event: 27
- Issues event: 16
- Pull request event: 4
- Push event: 95
- Release event: 1
- Watch event: 15
Committers metadata
Last synced: 11 months ago
Total Commits: 643
Total Committers: 8
Avg Commits per committer: 80.375
Development Distribution Score (DDS): 0.487
Commits in past year: 111
Committers in past year: 3
Avg Commits per committer in past year: 37.0
Development Distribution Score (DDS) in past year: 0.315
| Name | Commits | |
|---|---|---|
| Philipp | V****u | 330 |
| Philipp | p****r@h****e | 145 |
| Philipp Schneider | s****p@m****e | 116 |
| axelvonkamp | a****1@g****e | 39 |
| axelvonkamp | 4****p | 10 |
| AxelvonKamp | v****p@m****e | 1 |
| carrascomj | c****j@g****m | 1 |
| Paulocracy | 3****y | 1 |
Committer domains:
- mechthild01.service: 1
- gmx.de: 1
- mpi-magdeburg.mpg.de: 1
- hotmail.de: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 18
Total pull requests: 6
Average time to close issues: 18 days
Average time to close pull requests: 30 minutes
Total issue authors: 9
Total pull request authors: 3
Average comments per issue: 2.33
Average comments per pull request: 0.33
Merged pull request: 5
Bot issues: 0
Bot pull requests: 0
Past year issues: 12
Past year pull requests: 3
Past year average time to close issues: 25 days
Past year average time to close pull requests: less than a minute
Past year issue authors: 7
Past year pull request authors: 2
Past year average comments per issue: 2.5
Past year average comments per pull request: 0.33
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- VonAlphaBisZulu (7)
- cjavier98 (2)
- EmanuelGoncalves (2)
- tylerautera (2)
- cjrodriguez98 (1)
- JakubChromy (1)
- liaochen1988 (1)
- Ma-Yier (1)
- NoodleChad (1)
Top Pull Request Authors
- VonAlphaBisZulu (4)
- carrascomj (1)
- Quendie (1)
Top Issue Labels
- enhancement (5)
- bug (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 338 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 20
- Total maintainers: 1
pypi.org: straindesign
Computational strain design package for the COBRApy framework
- Homepage: https://github.com/klamt-lab/straindesign.git
- Documentation: https://straindesign.readthedocs.io/en/latest/index.html
- Licenses: Apache License 2.0
- Latest release: 1.4.1 (published almost 3 years ago)
- Last Synced: 2024-06-01T10:13:48.123Z (11 months ago)
- Versions: 20
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 338 Last month
-
Rankings:
- Downloads: 9.894%
- Dependent packages count: 10.109%
- Stargazers count: 11.914%
- Average: 14.071%
- Forks count: 16.878%
- Dependent repos count: 21.559%
- Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
- mamba-org/setup-micromamba v1 composite
- actions/checkout v3 composite
- actions/create-release v1 composite
- actions/setup-python v3 composite
- pypa/gh-action-pypi-publish release/v1 composite
- ipykernel *
- ipython *
- myst-parser *
- nbsphinx *
- pandoc *
- sphinx-autoapi *
- sphinx-rtd-theme *
- cobra *
- jpype1 *
- psutil *
- scipy *
- cobra *
- cobra
- jpype1
- pip
- psutil
- python
- scipy
- straindesign
Score: 11.669587274983606