https://github.com/kharchenkolab/numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
https://github.com/kharchenkolab/numbat
Keywords
cancer-genomics cnv-detection lineage-tracing phylogeny single-cell single-cell-analysis single-cell-rna-seq spatial-transcriptomics
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Haplotype-aware CNV analysis from single-cell RNA-seq
- Host: GitHub
- URL: https://github.com/kharchenkolab/numbat
- Owner: kharchenkolab
- License: other
- Created: 2021-05-25T14:49:18.000Z (almost 4 years ago)
- Default Branch: main
- Last Pushed: 2024-06-04T19:28:57.000Z (11 months ago)
- Last Synced: 2024-06-04T21:28:17.853Z (11 months ago)
- Topics: cancer-genomics, cnv-detection, lineage-tracing, phylogeny, single-cell, single-cell-analysis, single-cell-rna-seq, spatial-transcriptomics
- Language: R
- Homepage: https://kharchenkolab.github.io/numbat/
- Size: 367 MB
- Stars: 156
- Watchers: 9
- Forks: 22
- Open Issues: 62
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Kharchenko Lab
- Login: kharchenkolab
- Email:
- Kind: organization
- Description:
- Website: http://pklab.org
- Location:
- Twitter: KharchenkoLab
- Company:
- Icon url: https://avatars.githubusercontent.com/u/67511277?v=4
- Repositories: 21
- Last ynced at: 2023-03-03T19:42:54.504Z
- Profile URL: https://github.com/kharchenkolab
Committers metadata
Last synced: 12 months ago
Total Commits: 790
Total Committers: 10
Avg Commits per committer: 79.0
Development Distribution Score (DDS): 0.48
Commits in past year: 46
Committers in past year: 2
Avg Commits per committer in past year: 23.0
Development Distribution Score (DDS) in past year: 0.196
| Name | Commits | |
|---|---|---|
| teng-gao | g****g@w****u | 411 |
| teng-gao | t****g@g****m | 255 |
| evanbiederstedt | e****t@g****m | 81 |
| Teng Gao | t****o@g****u | 24 |
| hiraksarkar | h****r@u****u | 10 |
| evanbiederstedt | e****t | 3 |
| Teng Gao | t****o@a****u | 2 |
| whtns | k****k@g****m | 2 |
| Stefanos Alexandros Bamopoulos | s****m@h****g | 1 |
| igor | 6****t | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 162
Total pull requests: 10
Average time to close issues: 26 days
Average time to close pull requests: 5 days
Total issue authors: 92
Total pull request authors: 4
Average comments per issue: 2.74
Average comments per pull request: 5.2
Merged pull request: 8
Bot issues: 0
Bot pull requests: 0
Past year issues: 64
Past year pull requests: 0
Past year average time to close issues: 25 days
Past year average time to close pull requests: N/A
Past year issue authors: 42
Past year pull request authors: 0
Past year average comments per issue: 2.2
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- teng-gao (14)
- aranham (6)
- DarioS (6)
- aelhossiny (5)
- kokonech (5)
- Summerhythm (4)
- petrsh (3)
- rosaranli (3)
- whitneyt1 (3)
- wangsky137 (3)
- laijen000 (3)
- thomasveith (3)
- Moey-git (3)
- cathalgking (3)
- MigleMi (3)
Top Pull Request Authors
- evanbiederstedt (5)
- igordot (2)
- whtns (2)
- sbamopoulos (1)
Top Issue Labels
- enhancement (10)
- bug (6)
- tofix (4)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- cran: 770 last-month
- Total docker downloads: 90
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 8
- Total maintainers: 1
cran.r-project.org: numbat
Haplotype-Aware CNV Analysis from scRNA-Seq
- Homepage: https://github.com/kharchenkolab/numbat/
- Documentation: http://cran.r-project.org/web/packages/numbat/numbat.pdf
- Licenses: MIT + file LICENSE
- Latest release: 1.4.0 (published about 1 year ago)
- Last Synced: 2024-06-04T21:44:30.123Z (11 months ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 770 Last month
- Docker Downloads: 90
-
Rankings:
- Stargazers count: 4.142%
- Forks count: 5.307%
- Average: 21.642%
- Dependent packages count: 29.797%
- Downloads: 33.512%
- Dependent repos count: 35.455%
- Maintainers (1)
Dependencies
- R >= 4.0.0 depends
- GenomicRanges * imports
- IRanges * imports
- Matrix * imports
- R.utils * imports
- Rcpp * imports
- RcppParallel * imports
- RhpcBLASctl * imports
- Rsamtools * imports
- VGAM * imports
- ape * imports
- argparse * imports
- caTools * imports
- data.table * imports
- dendextend * imports
- dplyr * imports
- extraDistr * imports
- ggplot2 * imports
- ggraph * imports
- ggtree * imports
- glue * imports
- gtools * imports
- igraph * imports
- logger * imports
- magrittr * imports
- parallel * imports
- parallelDist * imports
- patchwork * imports
- phangorn * imports
- pryr * imports
- purrr * imports
- reshape2 * imports
- roptim * imports
- stringr * imports
- tidygraph * imports
- tidyr * imports
- vcfR * imports
- zoo * imports
- matrixStats * suggests
- testthat >= 3.0.0 suggests
Score: 14.447494846866562