https://github.com/xiaoli-dong/pathogenseq
Pathogen whole genome sequence (WGS) data analysis pipeline
amr
assembly
capsular-typing
emm-typing
illumina
mlst
nanopore
ngs
pathogen
plasmid
serotyping
taxonomy
virulome
Added: over 1 year ago - Last Synced: 11 months ago
- Created: June 28, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Nextflow
- Commits: 151
- Committers: 5
- Issues: 1
- Pull Requests: 0
- Owner: xiaoli-dong
- Stars: 2
- Forks: 1
- Packages: 0
https://github.com/mbhall88/tbpore
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
bioinformatics
drug-resistance-prediction
genomics
mycobacterium-tuberculosis
nanopore
variant-calling
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 25, 2021
https://github.com/hku-bal/clairs-to
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
bioinformatics
deep-learning
genomics
illumina
long-read-sequencing
long-reads
nanopore
ont
pacbio
snvs
somatic-mutations
somatic-variants
tumor-only
tumors
variant-calling
variants
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 07, 2023
