https://github.com/mbhall88/tbpore
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
https://github.com/mbhall88/tbpore
Keywords
bioinformatics drug-resistance-prediction genomics mycobacterium-tuberculosis nanopore variant-calling
Keywords from Contributors
conda control routing virtual transform crop report simulations weighted file-upload
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
- Host: GitHub
- URL: https://github.com/mbhall88/tbpore
- Owner: mbhall88
- License: mit
- Created: 2021-11-25T06:33:42.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2023-10-11T03:52:01.000Z (over 1 year ago)
- Last Synced: 2024-05-03T02:08:43.040Z (about 1 year ago)
- Topics: bioinformatics, drug-resistance-prediction, genomics, mycobacterium-tuberculosis, nanopore, variant-calling
- Language: Python
- Homepage:
- Size: 3.3 MB
- Stars: 11
- Watchers: 7
- Forks: 2
- Open Issues: 2
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE
Owner metadata
- Name: Michael Hall
- Login: mbhall88
- Email:
- Kind: user
- Description: Postdoc @ University of Melbourne with @lachlancoin. Bioinformatics | TB | Nanopore | Microbial Genomics | Software Dev.
- Website: https://mbh.sh
- Location: Sunshine Coast, Australia
- Twitter:
- Company: University of Melbourne | Doherty Institute
- Icon url: https://avatars.githubusercontent.com/u/20403931?v=4
- Repositories: 25
- Last ynced at: 2023-03-03T11:13:32.691Z
- Profile URL: https://github.com/mbhall88
GitHub Events
Total
- Create event: 27
- Release event: 11
- Issues event: 86
- Watch event: 12
- Delete event: 6
- Issue comment event: 253
- Member event: 3
- Push event: 86
- Pull request review event: 43
- Pull request review comment event: 44
- Pull request event: 27
- Fork event: 3
Last Year
- Create event: 7
- Delete event: 3
- Issue comment event: 12
- Issues event: 6
- Pull request event: 8
- Pull request review event: 1
- Push event: 15
- Release event: 1
- Watch event: 2
Committers metadata
Last synced: about 1 year ago
Total Commits: 261
Total Committers: 4
Avg Commits per committer: 65.25
Development Distribution Score (DDS): 0.364
Commits in past year: 10
Committers in past year: 2
Avg Commits per committer in past year: 5.0
Development Distribution Score (DDS) in past year: 0.1
| Name | Commits | |
|---|---|---|
| Leandro Ishi | l****a@g****m | 166 |
| Michael Hall | m****l@m****h | 93 |
| Leandro Lima | l****o@h****k | 1 |
| github-actions[bot] | 4****] | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 42
Total pull requests: 13
Average time to close issues: about 1 month
Average time to close pull requests: 3 days
Total issue authors: 5
Total pull request authors: 3
Average comments per issue: 6.17
Average comments per pull request: 1.92
Merged pull request: 12
Bot issues: 0
Bot pull requests: 2
Past year issues: 2
Past year pull requests: 2
Past year average time to close issues: 2 days
Past year average time to close pull requests: 23 minutes
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 1.0
Past year average comments per pull request: 1.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 2
Top Issue Authors
- leoisl (28)
- mbhall88 (11)
- FlorianePoint (1)
- jloubser (1)
- pedrodcb (1)
Top Pull Request Authors
- mbhall88 (6)
- leoisl (5)
- github-actions[bot] (2)
Top Issue Labels
Top Pull Request Labels
- autorelease: pending (1)
- autorelease: tagged (1)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 75 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 12
- Total maintainers: 1
pypi.org: tbpore
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
- Homepage: https://github.com/mbhall88/tbpore
- Documentation: https://tbpore.readthedocs.io/
- Licenses: MIT
- Latest release: 0.7.0 (published over 1 year ago)
- Last Synced: 2024-06-12T01:15:44.894Z (11 months ago)
- Versions: 12
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 75 Last month
-
Rankings:
- Dependent packages count: 10.126%
- Stargazers count: 17.739%
- Average: 18.414%
- Forks count: 19.143%
- Dependent repos count: 21.535%
- Downloads: 23.526%
- Maintainers (1)
Dependencies
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- python >=3.8,<4.0
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Score: 8.295049140435111