https://github.com/hku-bal/clairs-to

ClairS-TO - a deep-learning method for tumor-only somatic variant calling
https://github.com/hku-bal/clairs-to

Keywords

bioinformatics deep-learning genomics illumina long-read-sequencing long-reads nanopore ont pacbio snvs somatic-mutations somatic-variants tumor-only tumors variant-calling variants

Last synced: 11 months ago
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Acceptance Criteria

• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
• Fork? false

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Repository metadata

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

• Host: GitHub
• URL: https://github.com/hku-bal/clairs-to
• Owner: HKU-BAL
• License: bsd-3-clause
• Created: 2023-11-07T04:39:16.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-05-20T09:31:47.000Z (12 months ago)
• Last Synced: 2024-05-21T08:41:12.166Z (12 months ago)
• Topics: bioinformatics, deep-learning, genomics, illumina, long-read-sequencing, long-reads, nanopore, ont, pacbio, snvs, somatic-mutations, somatic-variants, tumor-only, tumors, variant-calling, variants
• Language: Python
• Homepage:
• Size: 1.95 MB
• Stars: 32
• Watchers: 2
• Forks: 2
• Open Issues: 1
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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Owner metadata

• Name: BAL
• Login: HKU-BAL
• Email:
• Kind: organization
• Description: HKUCS Bioinformatics Algorithm Lab
• Website:
• Location: Hong Kong
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/13270645?v=4
• Repositories: 14
• Last ynced at: 2023-03-03T05:21:08.934Z
• Profile URL: https://github.com/HKU-BAL

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GitHub Events

Total

• Create event: 3
• Issues event: 13
• Release event: 3
• Watch event: 30
• Delete event: 1
• Issue comment event: 26
• Push event: 32
• Public event: 1
• Pull request event: 2
• Fork event: 2

Last Year

• Create event: 3
• Delete event: 1
• Fork event: 2
• Issue comment event: 26
• Issues event: 13
• Public event: 1
• Pull request event: 2
• Push event: 32
• Release event: 3
• Watch event: 30

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Committers metadata

Last synced: about 1 year ago

Name	Email	Commits
JasonCLEI	7****6@q****m	66
zhengzhenxian	9****6@q****m	5
CHEN LEI	3****I	2
Changqing Wang	w****h@w****u	1
Junhao	s****t@g****m	1
LUO Ruibang	r****o@R****l	1

Committer domains:

• qq.com: 2
• wehi.edu.au: 1

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Issue and Pull Request metadata

Last synced: over 1 year ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/hku-bal/clairs-to

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Dependencies

Score: 5.288267030694535