https://github.com/xiaoli-dong/pathogenseq
Pathogen whole genome sequence (WGS) data analysis pipeline
https://github.com/xiaoli-dong/pathogenseq
Keywords
amr assembly capsular-typing emm-typing illumina mlst nanopore ngs pathogen plasmid serotyping taxonomy virulome
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Pathogen whole genome sequence (WGS) data analysis pipeline
- Host: GitHub
- URL: https://github.com/xiaoli-dong/pathogenseq
- Owner: xiaoli-dong
- License: mit
- Created: 2023-06-28T21:31:40.000Z (almost 2 years ago)
- Default Branch: main
- Last Pushed: 2024-05-02T17:22:03.000Z (about 1 year ago)
- Last Synced: 2024-05-03T04:04:39.094Z (about 1 year ago)
- Topics: amr, assembly, capsular-typing, emm-typing, illumina, mlst, nanopore, ngs, pathogen, plasmid, serotyping, taxonomy, virulome
- Language: Nextflow
- Homepage:
- Size: 2.47 MB
- Stars: 2
- Watchers: 1
- Forks: 1
- Open Issues: 1
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATIONS.md
Owner metadata
- Name: Xiaoli Dong
- Login: xiaoli-dong
- Email:
- Kind: user
- Description: Bioinformatician
- Website: http://people.ucalgary.ca/~xdong
- Location: Calgary
- Twitter: xiaoliidong
- Company: Public Health Laboratory - South, Alberta Precision Laboratories
- Icon url: https://avatars.githubusercontent.com/u/52679027?u=5544ec7b453c345f29f542655d0452ebd53d5166&v=4
- Repositories: 4
- Last ynced at: 2023-03-05T06:22:48.887Z
- Profile URL: https://github.com/xiaoli-dong
GitHub Events
Total
- Create event: 8
- Issues event: 2
- Release event: 7
- Watch event: 7
- Issue comment event: 1
- Push event: 140
- Fork event: 1
Last Year
- Create event: 7
- Fork event: 1
- Issue comment event: 1
- Issues event: 2
- Push event: 140
- Release event: 7
- Watch event: 7
Committers metadata
Last synced: about 1 year ago
Total Commits: 151
Total Committers: 5
Avg Commits per committer: 30.2
Development Distribution Score (DDS): 0.331
Commits in past year: 151
Committers in past year: 5
Avg Commits per committer in past year: 30.2
Development Distribution Score (DDS) in past year: 0.331
| Name | Commits | |
|---|---|---|
| Xiaoli Dong | 5****g | 101 |
| Xiaoli Dong - Laboratory Scientist I | x****g@u****a | 25 |
| xiaoli-dong | x****d@g****m | 23 |
| Xiaoli Dong - Laboratory Scientist I | x****g@u****a | 1 |
| xiaolidong | x****g@u****2 | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: about 1 year ago
Total issues: 1
Total pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Total issue authors: 1
Total pull request authors: 0
Average comments per issue: 1.0
Average comments per pull request: 0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 1.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- sgavril (1)
Top Pull Request Authors
Top Issue Labels
Top Pull Request Labels
Dependencies
- actions/upload-artifact v3 composite
- seqeralabs/action-tower-launch v1 composite
- actions/upload-artifact v3 composite
- seqeralabs/action-tower-launch v1 composite
- mshick/add-pr-comment v1 composite
- actions/checkout v3 composite
- nf-core/setup-nextflow v1 composite
- actions/stale v7 composite
- actions/checkout v3 composite
- actions/setup-node v3 composite
- actions/checkout v3 composite
- actions/setup-node v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v3 composite
- mshick/add-pr-comment v1 composite
- nf-core/setup-nextflow v1 composite
- psf/black stable composite
- dawidd6/action-download-artifact v2 composite
- marocchino/sticky-pull-request-comment v2 composite
- shovill 1.1.0.*
Score: 2.70805020110221