https://github.com/daylily-informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws
bioinformatics
bioinformatics-pipeline
budgeting
ec2
ephemeral
genomic-data-analysis
giab
human-genome
informatics
ngs
parallel-cluster
scalable
scaling
slurm
snakemake
snv-call
wgs
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 29, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 313
- Committers: 12
- Issues: 0
- Pull Requests: 17
- Owner: Daylily-Informatics
- Stars: 17
- Forks: 0
- Packages: 0
https://github.com/cdcgov/bpertussis-ciwgs
Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline 🧪🧬🖥️
bioinformatics
genomic-surveillance
nextflow
pertussis
wgs
Added: over 1 year ago - Last Synced: 11 months ago
- Created: November 20, 2023
