https://github.com/cdcgov/bpertussis-ciwgs

Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline ๐Ÿงช๐Ÿงฌ๐Ÿ–ฅ๏ธ
https://github.com/cdcgov/bpertussis-ciwgs

Keywords

bioinformatics genomic-surveillance nextflow pertussis wgs

Last synced: 11 months ago
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Acceptance Criteria

Repository metadata

Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline ๐Ÿงช๐Ÿงฌ๐Ÿ–ฅ๏ธ


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GitHub Events

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Last Year

Committers metadata

Last synced: 11 months ago

Total Commits: 15
Total Committers: 2
Avg Commits per committer: 7.5
Development Distribution Score (DDS): 0.2

Commits in past year: 15
Committers in past year: 2
Avg Commits per committer in past year: 7.5
Development Distribution Score (DDS) in past year: 0.2

Name Email Commits
Mike Weigand y****8@c****v 12
Mike Weigand w****r@g****m 3

Committer domains:


Issue and Pull Request metadata

Last synced: over 1 year ago

Total issues: 0
Total pull requests: 1
Average time to close issues: N/A
Average time to close pull requests: less than a minute
Total issue authors: 0
Total pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 0.0
Merged pull request: 1
Bot issues: 0
Bot pull requests: 0

Past year issues: 0
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: less than a minute
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.0
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/cdcgov/bpertussis-ciwgs

Top Issue Authors

Top Pull Request Authors

  • mikeyweigand (1)

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Dependencies

modules/local/dumpsoftwareversions/meta.yml cpan
modules/nf-core/modules/fastqc/meta.yml cpan
modules/nf-core/modules/multiqc/meta.yml cpan
modules/nf-core/modules/nf-core/blast/blastn/meta.yml cpan
modules/nf-core/modules/nf-core/bowtie2/align/meta.yml cpan
modules/nf-core/modules/nf-core/bowtie2/build/meta.yml cpan
modules/nf-core/modules/nf-core/quast/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/depth/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/fastq/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/fixmate/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/flagstat/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/index/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/markdup/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/sort/meta.yml cpan
modules/nf-core/modules/nf-core/samtools/view/meta.yml cpan

Score: 0.6931471805599453